cluster # 3076

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Anopheles gambiae
cluster # 3076 cluster # 3076 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3076#0 length = 511 sequences # 1

consensus_3076#1 length = 255 sequences # 1

consensusID : consensus_3076#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [GGCTAGACGCGCAGGGCAACATTGAACAACCCGCAACACTGCTGGCCCGGTTCGAAAGGGTACTGAAGGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGAAAACCGTGACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTCGCTCGAGCTGGTCGATTCTGCCCTGTTCTGCATCTGTCTCGACGATTCGACGATCGAGCCGGAAAATCCCATCCCGGCCATCCGCGAGTTCCTGTTCGGCGACGGCACCAACCGTTGGTTCGACAAATCGTTCACGCTGATCGTGGCCAAGGACGGTACGGCGGGCATCAACTTTGAGCACTCCTGGGGCGATGGTGTGGCCGTGCTGCGCTACTTCCAGGAGATCTTTAAGGAAACCACAACGGCACCGTTCGCCCAGGTCGGACTGCAAGGTGTGGACAATCAGTCCAAGGACGCAGTCGTACCGATCGAGTTCACGCTGGACGATCGGGT]

[+] EMBL BX625008             [GGCTAGACGCGCAGGGCAACATTGAACAACCCGCAACACTGCTGGCCCGGTTCGAAAGGGTACTGAAGGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGAAAACCGTGACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTCGCTCGAGCTGGTCGATTCTGCCCTGTTCTGCATCTGTCTCGACGATTCGACGATCGAGCCGGAAAATCCCATCCCGGCCATCCGCGAGTTCCTGTTCGGCGACGGCACCAACCGTTGGTTCGACAAATCGTTCACGCTGATCGTGGCCAAGGACGGTACGGCGGGCATCAACTTTGAGCACTCCTGGGGCGATGGTGTGGCCGTGCTGCGCTACTTCCAGGAGATCTTTAAGGAAACCACAACGGCACCGTTCGCCCAGGTCGGACTGCAAGGTGTGGACAATCAGTCCAAGGACGCAGTCGTACCGATCGAGTTCACGCTGGACGATCGGGT]




>consensus_3076#0
GGCTAGACGCGCAGGGCAACATTGAACAACCCGCAACACTGCTGGCCCGGTTCGAAAGGG
TACTGAAGGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGAAAACC
GTGACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTCGC
TCGAGCTGGTCGATTCTGCCCTGTTCTGCATCTGTCTCGACGATTCGACGATCGAGCCGG
AAAATCCCATCCCGGCCATCCGCGAGTTCCTGTTCGGCGACGGCACCAACCGTTGGTTCG
ACAAATCGTTCACGCTGATCGTGGCCAAGGACGGTACGGCGGGCATCAACTTTGAGCACT
CCTGGGGCGATGGTGTGGCCGTGCTGCGCTACTTCCAGGAGATCTTTAAGGAAACCACAA
CGGCACCGTTCGCCCAGGTCGGACTGCAAGGTGTGGACAATCAGTCCAAGGACGCAGTCG
TACCGATCGAGTTCACGCTGGACGATCGGGT

consensusID : consensus_3076#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [GCTCGAAGGCAGAATCGGCACACGGCGCATGTTACTGCTGGCCCGGTTCGAAAGGGTACTGAATGGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGACAAACCGTGACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTCGCTCGAGCTGGTCGATTCTGCCCTGTTCTGCATCTGGTCTCGACGAATTCGACGNATCGAGCCGGGAAAAGTCCCGATC]

[+] EMBL BX466401             [GCTCGAAGGCAGAATCGGCACACGGCGCATGTTACTGCTGGCCCGGTTCGAAAGGGTACTGAATGGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGACAAACCGTGACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTCGCTCGAGCTGGTCGATTCTGCCCTGTTCTGCATCTGGTCTCGACGAATTCGACGNATCGAGCCGGGAAAAGTCCCGATC]




>consensus_3076#1
GCTCGAAGGCAGAATCGGCACACGGCGCATGTTACTGCTGGCCCGGTTCGAAAGGGTACT
GAATGGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGACAAACCGT
GACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTCGCTC
GAGCTGGTCGATTCTGCCCTGTTCTGCATCTGGTCTCGACGAATTCGACGNATCGAGCCG
GGAAAAGTCCCGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3076#0      GGCTAGACGCGCAGGGCAACATTGAACAACCCGCAACACTGCTGGCCCGGTTCGAAAGGG 60
consensus_3076#1      -GCTCGAAG-GCAGAAT--CGGCACACGGCGCATGTTACTGCTGGCCCGGTTCGAAAGGG 56
                       *** ** * ****     *     **  * *     ***********************

consensus_3076#0      TACTGAA-GGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGA-AAA 118
consensus_3076#1      TACTGAATGGACGCGAAAGCTCCGGCCGCCGATCCGCTTGGTCTGCTGACGACGGACAAA 116
                      ******* ************************************************ ***

consensus_3076#0      CCGTGACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTC 178
consensus_3076#1      CCGTGACACGTGGGCAACGGCCCGAACGCACCTCACCCAGCTCGGCACCAATGCCCGTTC 176
                      ************************************************************

consensus_3076#0      GCTCGAGCTGGTCGATTCTGCCCTGTTCTGCATCTG-TCTCGACGA-TTCGACGA-TCGA 235
consensus_3076#1      GCTCGAGCTGGTCGATTCTGCCCTGTTCTGCATCTGGTCTCGACGAATTCGACGNATCGA 236
                      ************************************ ********* *******  ****

consensus_3076#0      GCCGGAAAATCCCATCCCGGCCATCCGCGAGTTCCTGTTCGGCGACGGCACCAACCGTTG 295
consensus_3076#1      GCCGGGAAA---AGTCCCGATC-------------------------------------- 255
                      ***** ***     *****  *                                      

consensus_3076#0      GTTCGACAAATCGTTCACGCTGATCGTGGCCAAGGACGGTACGGCGGGCATCAACTTTGA 355
consensus_3076#1      ------------------------------------------------------------
                                                                                  

consensus_3076#0      GCACTCCTGGGGCGATGGTGTGGCCGTGCTGCGCTACTTCCAGGAGATCTTTAAGGAAAC 415
consensus_3076#1      ------------------------------------------------------------
                                                                                  

consensus_3076#0      CACAACGGCACCGTTCGCCCAGGTCGGACTGCAAGGTGTGGACAATCAGTCCAAGGACGC 475
consensus_3076#1      ------------------------------------------------------------
                                                                                  

consensus_3076#0      AGTCGTACCGATCGAGTTCACGCTGGACGATCGGGT 511
consensus_3076#1      ------------------------------------