cluster # 3082

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Anopheles gambiae
cluster # 3082 cluster # 3082 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3082#0 length = 391 sequences # 1

consensus_3082#1 length = 261 sequences # 1

consensusID : consensus_3082#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TGTAGCGGCAATGGAATGCAATGGATTGATAAAAACAACGTGATTAGTTAACCAAAATCCAAGCATTCGATGCACGCGTAGTATGAATACGCGTACGATACGGATATTACGAGCAATGAATAGCACAGGGAAGGACGTGTGGAGAAAGATGTGGAAGAGAGATAGATCGAGCGAGGCATAAAAGTAATAAATAAATAGTGAAATAGTCATGTGATGTGTATTTGATATAGAGAGAGAGTTACAAAATGAAAGTAAGACATAACTATAAACAAATGATTTAACATAACAGTAACCAATTCACATTTACAAAACGATAAATTCCGCGTTAGTAATCAATGGCAAACAAAGCAAACTGTAGAACTGTACTCGGAAGAAGCAAAGGTGCAACAAA]

[+] EMBL BX617452             [TGTAGCGGCAATGGAATGCAATGGATTGATAAAAACAACGTGATTAGTTAACCAAAATCCAAGCATTCGATGCACGCGTAGTATGAATACGCGTACGATACGGATATTACGAGCAATGAATAGCACAGGGAAGGACGTGTGGAGAAAGATGTGGAAGAGAGATAGATCGAGCGAGGCATAAAAGTAATAAATAAATAGTGAAATAGTCATGTGATGTGTATTTGATATAGAGAGAGAGTTACAAAATGAAAGTAAGACATAACTATAAACAAATGATTTAACATAACAGTAACCAATTCACATTTACAAAACGATAAATTCCGCGTTAGTAATCAATGGCAAACAAAGCAAACTGTAGAACTGTACTCGGAAGAAGCAAAGGTGCAACAAA]




>consensus_3082#0
TGTAGCGGCAATGGAATGCAATGGATTGATAAAAACAACGTGATTAGTTAACCAAAATCC
AAGCATTCGATGCACGCGTAGTATGAATACGCGTACGATACGGATATTACGAGCAATGAA
TAGCACAGGGAAGGACGTGTGGAGAAAGATGTGGAAGAGAGATAGATCGAGCGAGGCATA
AAAGTAATAAATAAATAGTGAAATAGTCATGTGATGTGTATTTGATATAGAGAGAGAGTT
ACAAAATGAAAGTAAGACATAACTATAAACAAATGATTTAACATAACAGTAACCAATTCA
CATTTACAAAACGATAAATTCCGCGTTAGTAATCAATGGCAAACAAAGCAAACTGTAGAA
CTGTACTCGGAAGAAGCAAAGGTGCAACAAA

consensusID : consensus_3082#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [TGTAGCGGCAAGGGAAGGCAATGGATAGAAAAAAACAACGTGATGAGTGAACCAAAATCCAAGCATTCGAGGCACGCGTAGTATGAATACGCGTACGAAACGGATATTACGAGCAATGAATAGCACAGGGAAGGACGTGGGGAGAAAGAAGTGGAAGAGAGAAAGATCGAGCGAGGCATAAAAGGAAAAAAAAAAAAGGGAAAAAGCCAGGTGAAGTGGAATGGAAATAGAGAGAGAGGCACAAAATGAAAGGAAGACATA]

[+] EMBL BX611464             [TGTAGCGGCAAGGGAAGGCAATGGATAGAAAAAAACAACGTGATGAGTGAACCAAAATCCAAGCATTCGAGGCACGCGTAGTATGAATACGCGTACGAAACGGATATTACGAGCAATGAATAGCACAGGGAAGGACGTGGGGAGAAAGAAGTGGAAGAGAGAAAGATCGAGCGAGGCATAAAAGGAAAAAAAAAAAAGGGAAAAAGCCAGGTGAAGTGGAATGGAAATAGAGAGAGAGGCACAAAATGAAAGGAAGACATA]




>consensus_3082#1
TGTAGCGGCAAGGGAAGGCAATGGATAGAAAAAAACAACGTGATGAGTGAACCAAAATCC
AAGCATTCGAGGCACGCGTAGTATGAATACGCGTACGAAACGGATATTACGAGCAATGAA
TAGCACAGGGAAGGACGTGGGGAGAAAGAAGTGGAAGAGAGAAAGATCGAGCGAGGCATA
AAAGGAAAAAAAAAAAAGGGAAAAAGCCAGGTGAAGTGGAATGGAAATAGAGAGAGAGGC
ACAAAATGAAAGGAAGACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3082#0      TGTAGCGGCAATGGAATGCAATGGATTGATAAAAACAACGTGATTAGTTAACCAAAATCC 60
consensus_3082#1      TGTAGCGGCAAGGGAAGGCAATGGATAGAAAAAAACAACGTGATGAGTGAACCAAAATCC 60
                      *********** **** ********* ** ************** *** ***********

consensus_3082#0      AAGCATTCGATGCACGCGTAGTATGAATACGCGTACGATACGGATATTACGAGCAATGAA 120
consensus_3082#1      AAGCATTCGAGGCACGCGTAGTATGAATACGCGTACGAAACGGATATTACGAGCAATGAA 120
                      ********** *************************** *********************

consensus_3082#0      TAGCACAGGGAAGGACGTGTGGAGAAAGATGTGGAAGAGAGATAGATCGAGCGAGGCATA 180
consensus_3082#1      TAGCACAGGGAAGGACGTGGGGAGAAAGAAGTGGAAGAGAGAAAGATCGAGCGAGGCATA 180
                      ******************* ********* ************ *****************

consensus_3082#0      AAAGTAATAAATAAATAGTGAAATAGTCATGTGATGTGTATTTGATATAGAGAGAGAGTT 240
consensus_3082#1      AAAGGAAAAAAAAAAAAGGGAAAAAGCCAGGTGAAGTGGAATGGAAATAGAGAGAGAGGC 240
                      **** ** *** *** ** **** ** ** **** *** * * ** ************  

consensus_3082#0      ACAAAATGAAAGTAAGACATAACTATAAACAAATGATTTAACATAACAGTAACCAATTCA 300
consensus_3082#1      ACAAAATGAAAGGAAGACATA--------------------------------------- 261
                      ************ ********                                       

consensus_3082#0      CATTTACAAAACGATAAATTCCGCGTTAGTAATCAATGGCAAACAAAGCAAACTGTAGAA 360
consensus_3082#1      ------------------------------------------------------------
                                                                                  

consensus_3082#0      CTGTACTCGGAAGAAGCAAAGGTGCAACAAA 391
consensus_3082#1      -------------------------------