cluster # 3084

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Anopheles gambiae
cluster # 3084 cluster # 3084 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3084#0 length = 524 sequences # 1

consensus_3084#1 length = 367 sequences # 1

consensusID : consensus_3084#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [GAATCGGCACCAGGAGATTTACAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCGGACAACACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCGGGCCAGGAGCGGTTCGACGGCAATCGAAGGACATCCGGCATACGTTCAACATCTGCACGCTGAAACCGGACGGCGGCCCGGNTACCGGACGAACCGCGTGCCCGGCTTCCGGGACCACGTGTCCGACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGCTGCTGCAGGCGCTGGCCGTCGGGATGGAGCTGCCGTACGGGTACTTTCTCGAGAAGCACCGGCACATACTGGACGGCGAGGGCGAAAACCAGTCCACATTCCGGCGTGCTCTACTATCCGCCGCGTNATCGAGGACGACGGGAAGAATGAGCTGCTGCGCGGGACGTGCAAGTACAGCCAGCGAGCGCTTGCACCAAGGACGAGATCGACCTGTCCCTGCCCGAGGACTACCGTGCGAAGGTA]

[+] EMBL BX466425             [GAATCGGCACCAGGAGATTTACAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCGGACAACACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCGGGCCAGGAGCGGTTCGACGGCAATCGAAGGACATCCGGCATACGTTCAACATCTGCACGCTGAAACCGGACGGCGGCCCGGNTACCGGACGAACCGCGTGCCCGGCTTCCGGGACCACGTGTCCGACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGCTGCTGCAGGCGCTGGCCGTCGGGATGGAGCTGCCGTACGGGTACTTTCTCGAGAAGCACCGGCACATACTGGACGGCGAGGGCGAAAACCAGTCCACATTCCGGCGTGCTCTACTATCCGCCGCGTNATCGAGGACGACGGGAAGAATGAGCTGCTGCGCGGGACGTGCAAGTACAGCCAGCGAGCGCTTGCACCAAGGACGAGATCGACCTGTCCCTGCCCGAGGACTACCGTGCGAAGGTA]




>consensus_3084#0
GAATCGGCACCAGGAGATTTACAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCG
GACAACACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCG
GGCCAGGAGCGGTTCGACGGCAATCGAAGGACATCCGGCATACGTTCAACATCTGCACGC
TGAAACCGGACGGCGGCCCGGNTACCGGACGAACCGCGTGCCCGGCTTCCGGGACCACGT
GTCCGACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGCTGCTGCAGGCGCTGGCCGT
CGGGATGGAGCTGCCGTACGGGTACTTTCTCGAGAAGCACCGGCACATACTGGACGGCGA
GGGCGAAAACCAGTCCACATTCCGGCGTGCTCTACTATCCGCCGCGTNATCGAGGACGAC
GGGAAGAATGAGCTGCTGCGCGGGACGTGCAAGTACAGCCAGCGAGCGCTTGCACCAAGG
ACGAGATCGACCTGTCCCTGCCCGAGGACTACCGTGCGAAGGTA

consensusID : consensus_3084#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [GCCAGAATCGCCACGAGGTGTAAAAAAGGCATCGCGCTGCTGGCTAAACCATGGCATCTCGGAGGATAAGATGAAGCAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCGGACAAGCACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCGGGCCAGGAGCGGTTCGACGGCAAATCGAAGGACATCCGGCATACGTTCAACATCTGCACGCTGAAACCGGACGGCGGCCCGCTACCGGACGAACCGCTGCCCGGCTTCCGGGACCACGTGTCCGACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGCATGCTGCAGGCGCTGGCCGGTCGGGATGGGA]

[+] EMBL BX469111             [GCCAGAATCGCCACGAGGTGTAAAAAAGGCATCGCGCTGCTGGCTAAACCATGGCATCTCGGAGGATAAGATGAAGCAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCGGACAAGCACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCGGGCCAGGAGCGGTTCGACGGCAAATCGAAGGACATCCGGCATACGTTCAACATCTGCACGCTGAAACCGGACGGCGGCCCGCTACCGGACGAACCGCTGCCCGGCTTCCGGGACCACGTGTCCGACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGCATGCTGCAGGCGCTGGCCGGTCGGGATGGGA]




>consensus_3084#1
GCCAGAATCGCCACGAGGTGTAAAAAAGGCATCGCGCTGCTGGCTAAACCATGGCATCTC
GGAGGATAAGATGAAGCAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCGGACAA
GCACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCGGGCC
AGGAGCGGTTCGACGGCAAATCGAAGGACATCCGGCATACGTTCAACATCTGCACGCTGA
AACCGGACGGCGGCCCGCTACCGGACGAACCGCTGCCCGGCTTCCGGGACCACGTGTCCG
ACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGCATGCTGCAGGCGCTGGCCGGTCGG
GATGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3084#0      -----------------------------------------------------GAATCG- 6
consensus_3084#1      GCCAGAATCGCCACGAGGTGTAAAAAAGGCATCGCGCTGCTGGCTAAACCATGGCATCTC 60
                                                                           * ***  

consensus_3084#0      GCACCAGGAGATTTA-CAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCGGACAA 65
consensus_3084#1      GGAGGATAAGATGAAGCAGGTGTACGGCCATCTGGACGATTTCTGCAAGCTCTCGGACAA 120
                      * *  *  ****  * ********************************************

consensus_3084#0      -CACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCGGGCC 124
consensus_3084#1      GCACGAAGGAAACGTACCTGCGCAAAGGGGAAACGAACCACGGCTACATCAAACCGGGCC 180
                       ***********************************************************

consensus_3084#0      AGGAGCGGTTCGACGGCAA-TCGAAGGACATCCGGCATACGTTCAACATCTGCACGCTGA 183
consensus_3084#1      AGGAGCGGTTCGACGGCAAATCGAAGGACATCCGGCATACGTTCAACATCTGCACGCTGA 240
                      ******************* ****************************************

consensus_3084#0      AACCGGACGGCGGCCCGGNTACCGGACGAACCGCGTGCCCGGCTTCCGGGACCACGTGTC 243
consensus_3084#1      AACCGGACGGCGGCCCG-CTACCGGACGAACCGC-TGCCCGGCTTCCGGGACCACGTGTC 298
                      *****************  *************** *************************

consensus_3084#0      CGACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGC-TGCTGCAGGCGCTGGCCG-TC 301
consensus_3084#1      CGACCTGGCGACGGACTTCAAGCGCCTGTCGGCCCTGCATGCTGCAGGCGCTGGCCGGTC 358
                      ************************************** ****************** **

consensus_3084#0      GGGATGGAGCTGCCGTACGGGTACTTTCTCGAGAAGCACCGGCACATACTGGACGGCGAG 361
consensus_3084#1      GGGATGGGA--------------------------------------------------- 367
                      *******                                                     

consensus_3084#0      GGCGAAAACCAGTCCACATTCCGGCGTGCTCTACTATCCGCCGCGTNATCGAGGACGACG 421
consensus_3084#1      ------------------------------------------------------------
                                                                                  

consensus_3084#0      GGAAGAATGAGCTGCTGCGCGGGACGTGCAAGTACAGCCAGCGAGCGCTTGCACCAAGGA 481
consensus_3084#1      ------------------------------------------------------------
                                                                                  

consensus_3084#0      CGAGATCGACCTGTCCCTGCCCGAGGACTACCGTGCGAAGGTA 524
consensus_3084#1      -------------------------------------------