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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[GGCAGTGCTGTGCAGCCATCTTCATTATCGTCGTGGCTGCCGAACGGTGTGGCAGCGAGCGATCGAGCGAAAGGCACAAATCGCAAACGGCAGCCACTTTTCCGGTGGAAGGAAACCACCGAAAGGGTTTGTTCCAGTAGCGGCAACGCTTGGAGCGACAAAGCGCGACCAGGAATGGTCTGGAATTTTCCACAGTTGTTAGACCGAACACACGGCCCCACCCCCGTAGCAAGCACATTGAGTGTGTGTGTGTGTGTGAGTGTGTTTAATTGCATTAAAAAAAAAAGACAAAACAATGCACACACTACAATCGAACGGAAAAGCGAACGCTAATTAGTGTCTGTGAGTGTACGCATGTGTATGTGTGTGTACGTTTGTGTTGTGACGTTTGTAGCAAATTCTTAATCACATTAGACAAAAACAGCAAAAAAGGGGCATTTTTCTTCATCAGCGCCAACTTCGATAAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCTTCTACCCCTTCCCCTCACCCTCTAGCATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAACAAACGTCGGTCGTCGTCGCTGACGGGAA]
[+] EMBL BX611519 [GGCAGTGCTGTGCAGCCATCTTCATTATCGTCGTGGCTGCCGAACGGTGTGGCAGCGAGCGATCGAGCGAAAGGCACAAATCGCAAACGGCAGCCACTTTTCCGGTGGAAGGAAACCACCGAAAGGGTTTGTTCCAGTAGCGGCAACGCTTGGAGCGACAAAGCGCGACCAGGAATGGTCTGGAATTTTCCACAGTTGTTAGACCGAACACACGGCCCCACCCCCGTAGCAAGCACATTGAGTGTGTGTGTGTGTGTGAGTGTGTTTAATTGCATTAAAAAAAAAAGACAAAACAATGCACACACTACAATCGAACGGAAAAGCGAACGCTAATTAGTGTCTGTGAGTGTACGCATGTGTATGTGTGTGTACGTTTGTGTTGTGACGTTTGTAGCAAATTCTTAATCACATTAGACAAAAACAGCAAAAAAGGGGCATTTTTCTTCATCAGCGCCAACTTCGATAAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCTTCTACCCCTTCCCCTCACCCTCTAGCATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAACAAACGTCGGTCGTCGTCGCTGACGGGAA]
consensusID : consensus_3087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[CNTGGTCGTATGGTGGTCGTGGTAACGTCTGGTGGTTTGTCGACCGTGATGTACGTCAAATTCCTGAATCCACATGTNNCACAAAAACAAGCAAGAAAAGGGGCATTTGNTCTANCATCAGCGCCAACTTCGATNNAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCNTGTCTGACCCCTTCCCCTCAACCCGTCTANNATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAGCAAACGTCGGTCGTCGTCGCTGACGGGAATGTCAAGAAATTGCGTGGTACGAAAAGTGTGCANAATNCCCTCNGGGAACCTCGGGAACTGGGGGGCGGAGGTAAGAGGAGGAAAGCGGGGNGGAAAAGGGGGTGGC]
[+] EMBL BX619181 [CNTGGTCGTATGGTGGTCGTGGTAACGTCTGGTGGTTTGTCGACCGTGATGTACGTCAAATTCCTGAATCCACATGTNNCACAAAAACAAGCAAGAAAAGGGGCATTTGNTCTANCATCAGCGCCAACTTCGATNNAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCNTGTCTGACCCCTTCCCCTCAACCCGTCTANNATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAGCAAACGTCGGTCGTCGTCGCTGACGGGAATGTCAAGAAATTGCGTGGTACGAAAAGTGTGCANAATNCCCTCNGGGAACCTCGGGAACTGGGGGGCGGAGGTAAGAGGAGGAAAGCGGGGNGGAAAAGGGGGTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3087#0 GGCAGTGCTGTGCAGCCATCTTCATTATCGTCGTGGCTGCCGAACGGTGTGGCAGCGAGC 60
consensus_3087#1 ------------------------------------------------------------
consensus_3087#0 GATCGAGCGAAAGGCACAAATCGCAAACGGCAGCCACTTTTCCGGTGGAAGGAAACCACC 120
consensus_3087#1 ------------------------------------------------------------
consensus_3087#0 GAAAGGGTTTGTTCCAGTAGCGGCAACGCTTGGAGCGACAAAGCGCGACCAGGAATGGTC 180
consensus_3087#1 ------------------------------------------------------------
consensus_3087#0 TGGAATTTTCCACAGTTGTTAGACCGAACACACGGCCCCACCCCCGTAGCAAGCACATTG 240
consensus_3087#1 ------------------------------------------------------------
consensus_3087#0 AGTGTGTGTGTGTGTGTGAGTGTGTTTAATTGCATTAAAAAAAAAAGACAAAACAATGCA 300
consensus_3087#1 ------------------------------------------------------------
consensus_3087#0 CACACTACAATCGAACGGAAAAGCGAACGCTAATTAGTGTCTGTGAGTGTACGCATGTGT 360
consensus_3087#1 -----------------------------------CNTGGTCGTATG-GTGGTCGTGGTA 24
** ** * ** * **
consensus_3087#0 ATGTGTGTGTACGTTTGTGTTGTGACGTTTGTAGCAAATTCTTAAT----CACATTAGAC 416
consensus_3087#1 ACGTCTGGTGGTTTGTCGACCGTGATGTACGT--CAAATTCCTGAATCCACATGTNNCAC 82
* ** ** * * **** ** ** ******* * * ** * **
consensus_3087#0 AAAAACA-GCAA-AAAAGGGGCATTT-TTCT-TCATCAGCGCCAACTTCGATAA-GGTTG 471
consensus_3087#1 AAAAACAAGCAAGAAAAGGGGCATTTGNTCTANCATCAGCGCCAACTTCGATNNAGGTTG 142
******* **** ************* *** ******************* *****
consensus_3087#0 ATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACA 531
consensus_3087#1 ATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACA 202
************************************************************
consensus_3087#0 CAAAAACACTCACACACACAGCATCCTCTTCT---ACCCCTTCCCCTCACCC--TCTAGC 586
consensus_3087#1 CAAAAACACTCACACACACAGCATCCTCNTGTCTGACCCCTTCCCCTCAACCCGTCTANN 262
**************************** * * ************** ** ****
consensus_3087#0 ATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAACAAACGTCGGTCGTCGTCGCTG 646
consensus_3087#1 ATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAGCAAACGTCGGTCGTCGTCGCTG 322
************************************* **********************
consensus_3087#0 ACGGGAA----------------------------------------------------- 653
consensus_3087#1 ACGGGAATGTCAAGAAATTGCGTGGTACGAAAAGTGTGCANAATNCCCTCNGGGAACCTC 382
*******
consensus_3087#0 ------------------------------------------------------
consensus_3087#1 GGGAACTGGGGGGCGGAGGTAAGAGGAGGAAAGCGGGGNGGAAAAGGGGGTGGC 436
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||