cluster # 3103

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Anopheles gambiae
cluster # 3103 cluster # 3103 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3103#0 length = 636 sequences # 1

consensus_3103#1 length = 274 sequences # 1

consensusID : consensus_3103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [GACCCAACCCAGCTGCCCGCAAATGAGAAGTTTACTCGTGTTGGCTGTCCTCGTGACGGCCTCCCAGGCGTACTCGGTGTTCCAGAACCCACCGTGCTCGGGCACCACGCCCTGTCTGATCAACTGCGTGCAGAACTCGCGCTGCCCGATCTACAACCCGGCCAAGCCGGTCCTGCTTCCCGGCCCGACCTGCGACCGTTTCTACAAGTGCGAAAGTGGCCGCGCCTGCGAGACCCTCTGCCCGGGGGGTACCCACTTCAATGCCCGCGAGCAGGCGTGCGACTGGCCGCACCGTGCCTGTTGCGACCCGAACATTGAGTGCCGTCCGGATCCGTGCGGACCCAACGGTGACTGCGGAGGCGGTGGCGGTCCGATCATTCCACCACCCCCACCACCTCCACCACCGCCACCACCACCACAGCCCCCGTGCAGCGGTGGAGGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCCGATGTTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAAGTGTATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGCCAAGCAGATCTGCGACTGGNCGNTCCAGGCTTGCTG]

[+] EMBL BX620426             [GACCCAACCCAGCTGCCCGCAAATGAGAAGTTTACTCGTGTTGGCTGTCCTCGTGACGGCCTCCCAGGCGTACTCGGTGTTCCAGAACCCACCGTGCTCGGGCACCACGCCCTGTCTGATCAACTGCGTGCAGAACTCGCGCTGCCCGATCTACAACCCGGCCAAGCCGGTCCTGCTTCCCGGCCCGACCTGCGACCGTTTCTACAAGTGCGAAAGTGGCCGCGCCTGCGAGACCCTCTGCCCGGGGGGTACCCACTTCAATGCCCGCGAGCAGGCGTGCGACTGGCCGCACCGTGCCTGTTGCGACCCGAACATTGAGTGCCGTCCGGATCCGTGCGGACCCAACGGTGACTGCGGAGGCGGTGGCGGTCCGATCATTCCACCACCCCCACCACCTCCACCACCGCCACCACCACCACAGCCCCCGTGCAGCGGTGGAGGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCCGATGTTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAAGTGTATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGCCAAGCAGATCTGCGACTGGNCGNTCCAGGCTTGCTG]




>consensus_3103#0
GACCCAACCCAGCTGCCCGCAAATGAGAAGTTTACTCGTGTTGGCTGTCCTCGTGACGGC
CTCCCAGGCGTACTCGGTGTTCCAGAACCCACCGTGCTCGGGCACCACGCCCTGTCTGAT
CAACTGCGTGCAGAACTCGCGCTGCCCGATCTACAACCCGGCCAAGCCGGTCCTGCTTCC
CGGCCCGACCTGCGACCGTTTCTACAAGTGCGAAAGTGGCCGCGCCTGCGAGACCCTCTG
CCCGGGGGGTACCCACTTCAATGCCCGCGAGCAGGCGTGCGACTGGCCGCACCGTGCCTG
TTGCGACCCGAACATTGAGTGCCGTCCGGATCCGTGCGGACCCAACGGTGACTGCGGAGG
CGGTGGCGGTCCGATCATTCCACCACCCCCACCACCTCCACCACCGCCACCACCACCACA
GCCCCCGTGCAGCGGTGGAGGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCC
GATGTTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAA
GTGTATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGC
CAAGCAGATCTGCGACTGGNCGNTCCAGGCTTGCTG

consensusID : consensus_3103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [AATCCGCACGANNGGAGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCCGATGTTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAAGTGTATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGCCAAGCAGATCTGCGACTGGCCGTTCCAGGCTTGCTGCGACCCGAACGTTGAGTGCCGCCCGGACCCATGCGGACCCAGCGGTTACTGCGGAGGCGGTG]

[+] EMBL BX466473             [AATCCGCACGANNGGAGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCCGATGTTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAAGTGTATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGCCAAGCAGATCTGCGACTGGCCGTTCCAGGCTTGCTGCGACCCGAACGTTGAGTGCCGCCCGGACCCATGCGGACCCAGCGGTTACTGCGGAGGCGGTG]




>consensus_3103#1
AATCCGCACGANNGGAGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCCGATG
TTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAAGTGT
ATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGCCAAG
CAGATCTGCGACTGGCCGTTCCAGGCTTGCTGCGACCCGAACGTTGAGTGCCGCCCGGAC
CCATGCGGACCCAGCGGTTACTGCGGAGGCGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3103#0      GACCCAACCCAGCTGCCCGCAAATGAGAAGTTTACTCGTGTTGGCTGTCCTCGTGACGGC 60
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      CTCCCAGGCGTACTCGGTGTTCCAGAACCCACCGTGCTCGGGCACCACGCCCTGTCTGAT 120
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      CAACTGCGTGCAGAACTCGCGCTGCCCGATCTACAACCCGGCCAAGCCGGTCCTGCTTCC 180
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      CGGCCCGACCTGCGACCGTTTCTACAAGTGCGAAAGTGGCCGCGCCTGCGAGACCCTCTG 240
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      CCCGGGGGGTACCCACTTCAATGCCCGCGAGCAGGCGTGCGACTGGCCGCACCGTGCCTG 300
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      TTGCGACCCGAACATTGAGTGCCGTCCGGATCCGTGCGGACCCAACGGTGACTGCGGAGG 360
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      CGGTGGCGGTCCGATCATTCCACCACCCCCACCACCTCCACCACCGCCACCACCACCACA 420
consensus_3103#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_3103#0      GCCCCCGTGCAGCGGTGGAGGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCC 480
consensus_3103#1      ATCCGCA-----CGANNGGAGCATCTGTGCCATCAACTGCCCCGTAGACAACCGTTGCCC 56
                        ** *      **   *  ****************************************

consensus_3103#0      GATGTTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAA 540
consensus_3103#1      GATGTTTGACGGCTTGAAGCCGACGCTCCTGCCCGGACCGAACTGTGGCGTGTACGCCAA 116
                      ************************************************************

consensus_3103#0      GTGTATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGC 600
consensus_3103#1      GTGTATCGCTGGACGTGCCTGCCCGATGCAGTGCCCCGCTGGACTGCACTTCAATGCCGC 176
                      ************************************************************

consensus_3103#0      CAAGCAGATCTGCGACTGGNCGNTCCAGGCTTGCTG------------------------ 636
consensus_3103#1      CAAGCAGATCTGCGACTGGCCGTTCCAGGCTTGCTGCGACCCGAACGTTGAGTGCCGCCC 236
                      ******************* ** *************                        

consensus_3103#0      --------------------------------------
consensus_3103#1      GGACCCATGCGGACCCAGCGGTTACTGCGGAGGCGGTG 274