cluster # 3119

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Anopheles gambiae
cluster # 3119 cluster # 3119 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3119#0 length = 713 sequences # 1

consensus_3119#1 length = 679 sequences # 1

consensusID : consensus_3119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [CGAAAACAACATCCTCCTCTTCCACTAATCAATCAGCAGCGTTTTGTGGTGATTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACTCGCAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTATCTCGCTCTTACGTTCAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGCTGCGTTGCACTGCAGACTTCGGCAGCACTCGCACAGTCGCAGCAAACCTTCCGCTCGCNACCACAGTACGGCAATCGTGGGTTCCTCGTTCGCTGCTCCCGCACT]

[+] EMBL BX623898             [CGAAAACAACATCCTCCTCTTCCACTAATCAATCAGCAGCGTTTTGTGGTGATTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACTCGCAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTATCTCGCTCTTACGTTCAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGCTGCGTTGCACTGCAGACTTCGGCAGCACTCGCACAGTCGCAGCAAACCTTCCGCTCGCNACCACAGTACGGCAATCGTGGGTTCCTCGTTCGCTGCTCCCGCACT]




>consensus_3119#0
CGAAAACAACATCCTCCTCTTCCACTAATCAATCAGCAGCGTTTTGTGGTGATTGCGTTA
ATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGC
GTGTGCGAGACAGGACACTCGCAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCAT
AACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCC
CACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCAC
TCTCTCTATCTCTCTCTATCTCGCTCTTACGTTCAGTGTTCTGAAACGATCGGCGGGGAT
TCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACT
ACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACA
GCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATT
GTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGC
TACTGGGCTGCGTTGCACTGCAGACTTCGGCAGCACTCGCACAGTCGCAGCAAACCTTCC
GCTCGCNACCACAGTACGGCAATCGTGGGTTCCTCGTTCGCTGCTCCCGCACT

consensusID : consensus_3119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGCAGAGAGGTTGCCTGCAGTCAAGCACGCGAAAACAACATCCTCCTCTTCAACTAATCAATCAGCAGCGTTTTGTGGTGGTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACGCACAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTTACGTTTAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGGCTGCGTTGCACTGCACACTTCG]

[+] EMBL BM587152             [CCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGCAGAGAGGTTGCCTGCAGTCAAGCACGCGAAAACAACATCCTCCTCTTCAACTAATCAATCAGCAGCGTTTTGTGGTGGTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACGCACAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTTACGTTTAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGGCTGCGTTGCACTGCACACTTCG]




>consensus_3119#1
CCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGCAGAGAGGTTGCCTGCAGTCAAGCACG
CGAAAACAACATCCTCCTCTTCAACTAATCAATCAGCAGCGTTTTGTGGTGGTGCGTTAA
TCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCG
TGTGCGAGACAGGACACGCACAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATA
ACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCC
ACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACT
CTCTCTATCTCTCTCTTACGTTTAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTG
TGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTC
GCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTG
TGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGC
GTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGGCTG
CGTTGCACTGCACACTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3119#0      ------------------------------------------------------------
consensus_3119#1      CCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGCAGAGAGGTTGCCTGCAGTCAAGCACG 60
                                                                                  

consensus_3119#0      CGAAAACAACATCCTCCTCTTCCACTAATCAATCAGCAGCGTTTTGTGGTGATTGCGTTA 60
consensus_3119#1      CGAAAACAACATCCTCCTCTTCAACTAATCAATCAGCAGCGTTTTGTGGTGGT-GCGTTA 119
                      ********************** **************************** * ******

consensus_3119#0      ATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGC 120
consensus_3119#1      ATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGC 179
                      ************************************************************

consensus_3119#0      GTGTGCGAGACAGGACACTCGCAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCAT 180
consensus_3119#1      GTGTGCGAGACAGGACACGCACAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCAT 239
                      ****************** * ***************************************

consensus_3119#0      AACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCC 240
consensus_3119#1      AACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCC 299
                      ************************************************************

consensus_3119#0      CACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCAC 300
consensus_3119#1      CACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCAC 359
                      ************************************************************

consensus_3119#0      TCTCTCTATCTCTCTCTATCTCGCTCTTACGTTCAGTGTTCTGAAACGATCGGCGGGGAT 360
consensus_3119#1      TCTCTCTATCTCTCTCT----------TACGTTTAGTGTTCTGAAACGATCGGCGGGGAT 409
                      *****************          ****** **************************

consensus_3119#0      TCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACT 420
consensus_3119#1      TCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACT 469
                      ************************************************************

consensus_3119#0      ACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACA 480
consensus_3119#1      ACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACA 529
                      ************************************************************

consensus_3119#0      GCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATT 540
consensus_3119#1      GCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATT 589
                      ************************************************************

consensus_3119#0      GTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGC 600
consensus_3119#1      GTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGC 649
                      ************************************************************

consensus_3119#0      TACTGGG-CTGCGTTGCACTGCAGACTTCGGCAGCACTCGCACAGTCGCAGCAAACCTTC 659
consensus_3119#1      TACTGGGGCTGCGTTGCACTGCACACTTCG------------------------------ 679
                      ******* *************** ******                              

consensus_3119#0      CGCTCGCNACCACAGTACGGCAATCGTGGGTTCCTCGTTCGCTGCTCCCGCACT 713
consensus_3119#1      ------------------------------------------------------