cluster # 3132

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Anopheles gambiae
cluster # 3132 cluster # 3132 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3132#0 length = 448 sequences # 1

consensus_3132#1 length = 263 sequences # 1

consensusID : consensus_3132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [CCNAGGTTATGTTGTCGCTATGGAGCAACTACGAGCGGCACAAAACCCGTCACGCTTACGTACACGAAGCAGGAAGGTTATTACGTATGTGTGTGTACTGCGTTATCATTGAATATGACGTCATATGGTTCGTGTTTTACCTTGTGTAATAACCTCTCTATAGCCTAGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGGGTCACGCGTAATACACGCGAGTGCTGGTAGTATTCGAACGCACGCAGCATCCGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAAATGACGCTCTCTGTATGAGAGTGTGCGGTATGGGTGTCTAGACGACAACGATAATGGCACATTATCTAACCCCCCCTTTTAATAAACGCTAAAAACAAACG]

[+] EMBL AL931665             [CCNAGGTTATGTTGTCGCTATGGAGCAACTACGAGCGGCACAAAACCCGTCACGCTTACGTACACGAAGCAGGAAGGTTATTACGTATGTGTGTGTACTGCGTTATCATTGAATATGACGTCATATGGTTCGTGTTTTACCTTGTGTAATAACCTCTCTATAGCCTAGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGGGTCACGCGTAATACACGCGAGTGCTGGTAGTATTCGAACGCACGCAGCATCCGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAAATGACGCTCTCTGTATGAGAGTGTGCGGTATGGGTGTCTAGACGACAACGATAATGGCACATTATCTAACCCCCCCTTTTAATAAACGCTAAAAACAAACG]




>consensus_3132#0
CCNAGGTTATGTTGTCGCTATGGAGCAACTACGAGCGGCACAAAACCCGTCACGCTTACG
TACACGAAGCAGGAAGGTTATTACGTATGTGTGTGTACTGCGTTATCATTGAATATGACG
TCATATGGTTCGTGTTTTACCTTGTGTAATAACCTCTCTATAGCCTAGCTGCTGTATCTC
TCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGGGTCACGC
GTAATACACGCGAGTGCTGGTAGTATTCGAACGCACGCAGCATCCGAAACTCCTTACATT
AATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAAATGACGCTCTCTG
TATGAGAGTGTGCGGTATGGGTGTCTAGACGACAACGATAATGGCACATTATCTAACCCC
CCCTTTTAATAAACGCTAAAAACAAACG

consensusID : consensus_3132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [AGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGCGTCACGCGTAATACACGCGAGTGCTGTTAGTATTCGAACGCACGCAGCAGCGGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAGATGAATAAAACGGGATATATGGTGGCTCTGTATGAGCGTGTGCGGTATAAGTGTCTAGATGGCAACGATAATGGCACATTAT]

[+] EMBL BX610406             [AGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGCGTCACGCGTAATACACGCGAGTGCTGTTAGTATTCGAACGCACGCAGCAGCGGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAGATGAATAAAACGGGATATATGGTGGCTCTGTATGAGCGTGTGCGGTATAAGTGTCTAGATGGCAACGATAATGGCACATTAT]




>consensus_3132#1
AGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAAT
GGTTAGCGTCACGCGTAATACACGCGAGTGCTGTTAGTATTCGAACGCACGCAGCAGCGG
AAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACA
GATGAATAAAACGGGATATATGGTGGCTCTGTATGAGCGTGTGCGGTATAAGTGTCTAGA
TGGCAACGATAATGGCACATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3132#0      CCNAGGTTATGTTGTCGCTATGGAGCAACTACGAGCGGCACAAAACCCGTCACGCTTACG 60
consensus_3132#1      ------------------------------------------------------------
                                                                                  

consensus_3132#0      TACACGAAGCAGGAAGGTTATTACGTATGTGTGTGTACTGCGTTATCATTGAATATGACG 120
consensus_3132#1      ------------------------------------------------------------
                                                                                  

consensus_3132#0      TCATATGGTTCGTGTTTTACCTTGTGTAATAACCTCTCTATAGCCTAGCTGCTGTATCTC 180
consensus_3132#1      ----------------------------------------------AGCTGCTGTATCTC 14
                                                                    **************

consensus_3132#0      TCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGGGTCACGC 240
consensus_3132#1      TCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGCGTCACGC 74
                      **************************************************** *******

consensus_3132#0      GTAATACACGCGAGTGCTGGTAGTATTCGAACGCACGCAGCATCCGAAACTCCTTACATT 300
consensus_3132#1      GTAATACACGCGAGTGCTGTTAGTATTCGAACGCACGCAGCAGCGGAAACTCCTTACATT 134
                      ******************* ********************** * ***************

consensus_3132#0      AATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAAATGA--------- 351
consensus_3132#1      AATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAGATGAATAAAACGG 194
                      ********************************************** ****         

consensus_3132#0      ------CGCT--CTCTGTATGAGAGTGTGCGGTATGGGTGTCTAGACGACAACGATAATG 403
consensus_3132#1      GATATATGGTGGCTCTGTATGAGCGTGTGCGGTATAAGTGTCTAGATGGCAACGATAATG 254
                             * *  *********** ***********  ********* * ***********

consensus_3132#0      GCACATTATCTAACCCCCCCTTTTAATAAACGCTAAAAACAAACG 448
consensus_3132#1      GCACATTAT------------------------------------ 263
                      *********