cluster # 3135

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Anopheles gambiae
cluster # 3135 cluster # 3135 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3135#0 length = 449 sequences # 1

consensus_3135#1 length = 317 sequences # 1

consensusID : consensus_3135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [TGCTACGAGAGCCATCCAGCGCACCATTCAAACAACAACATCTGACTTGCGAGGAATCACACACCGATTGCACCGCGTGCGTGCGTGATTGCAGCGAAGCCGGTTACATTCGTCTTTGTGTTCCTCTGAGAAGTTTTATGTGTGTGTGTGTGTGTGCGTGCGTGCGCGTGTGTTCGTTTAGTGACAAAACGCGTCGTGTGCGGGCGTGATTTATTGTTTTAATCGTCCTTACCTAATTGTGTGTGTGTCTCCCTACCCTGTCACAAGATGCGTCGCAAAGTGCTGTTCCGTGTGGTGTGCGTGTGAGTGCAATGTCCTTTTTTGTTGGCTGAGCGGCGGCATATAACGCTCCCCATGTAACAGAAACGGGGGGAAAATAAGCCTTTCCTTCCGTAACATAACCCCAAAAAGCAGAAAGTGTGTGCGTGCGTGTGTGCGGGGATAGAGTT]

[+] EMBL BX613880             [TGCTACGAGAGCCATCCAGCGCACCATTCAAACAACAACATCTGACTTGCGAGGAATCACACACCGATTGCACCGCGTGCGTGCGTGATTGCAGCGAAGCCGGTTACATTCGTCTTTGTGTTCCTCTGAGAAGTTTTATGTGTGTGTGTGTGTGTGCGTGCGTGCGCGTGTGTTCGTTTAGTGACAAAACGCGTCGTGTGCGGGCGTGATTTATTGTTTTAATCGTCCTTACCTAATTGTGTGTGTGTCTCCCTACCCTGTCACAAGATGCGTCGCAAAGTGCTGTTCCGTGTGGTGTGCGTGTGAGTGCAATGTCCTTTTTTGTTGGCTGAGCGGCGGCATATAACGCTCCCCATGTAACAGAAACGGGGGGAAAATAAGCCTTTCCTTCCGTAACATAACCCCAAAAAGCAGAAAGTGTGTGCGTGCGTGTGTGCGGGGATAGAGTT]




>consensus_3135#0
TGCTACGAGAGCCATCCAGCGCACCATTCAAACAACAACATCTGACTTGCGAGGAATCAC
ACACCGATTGCACCGCGTGCGTGCGTGATTGCAGCGAAGCCGGTTACATTCGTCTTTGTG
TTCCTCTGAGAAGTTTTATGTGTGTGTGTGTGTGTGCGTGCGTGCGCGTGTGTTCGTTTA
GTGACAAAACGCGTCGTGTGCGGGCGTGATTTATTGTTTTAATCGTCCTTACCTAATTGT
GTGTGTGTCTCCCTACCCTGTCACAAGATGCGTCGCAAAGTGCTGTTCCGTGTGGTGTGC
GTGTGAGTGCAATGTCCTTTTTTGTTGGCTGAGCGGCGGCATATAACGCTCCCCATGTAA
CAGAAACGGGGGGAAAATAAGCCTTTCCTTCCGTAACATAACCCCAAAAAGCAGAAAGTG
TGTGCGTGCGTGTGTGCGGGGATAGAGTT

consensusID : consensus_3135#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [CCGCGTGTGTTCGTTTACTGACAAAACGCGTCCTGTGCGGGCGTGATTTAGTGTTTTAATCGTCCTTACCTAATTGTGTGTGTGTCTCCCTACCCTGTCACAACATGCGTCACAAAGTGCTGTTTCGTGTGGTGTGCGTGTGAGTGCAATGTCCCTTTTTCTTGGCTGAGCGGAGGCATACAACGCTCCCCATGTAACAGCGACGGGGGGAAAATAAGCCTTTCCTTCCGTAGCATAACCCCAAAAAGCAGAAAGTGTGTCCAGGGATAGAATTTGTCCCGATAGATCTTATCGTTTCCGGCAAGTGTTTGTGTGTG]

[+] EMBL BM587126             [CCGCGTGTGTTCGTTTACTGACAAAACGCGTCCTGTGCGGGCGTGATTTAGTGTTTTAATCGTCCTTACCTAATTGTGTGTGTGTCTCCCTACCCTGTCACAACATGCGTCACAAAGTGCTGTTTCGTGTGGTGTGCGTGTGAGTGCAATGTCCCTTTTTCTTGGCTGAGCGGAGGCATACAACGCTCCCCATGTAACAGCGACGGGGGGAAAATAAGCCTTTCCTTCCGTAGCATAACCCCAAAAAGCAGAAAGTGTGTCCAGGGATAGAATTTGTCCCGATAGATCTTATCGTTTCCGGCAAGTGTTTGTGTGTG]




>consensus_3135#1
CCGCGTGTGTTCGTTTACTGACAAAACGCGTCCTGTGCGGGCGTGATTTAGTGTTTTAAT
CGTCCTTACCTAATTGTGTGTGTGTCTCCCTACCCTGTCACAACATGCGTCACAAAGTGC
TGTTTCGTGTGGTGTGCGTGTGAGTGCAATGTCCCTTTTTCTTGGCTGAGCGGAGGCATA
CAACGCTCCCCATGTAACAGCGACGGGGGGAAAATAAGCCTTTCCTTCCGTAGCATAACC
CCAAAAAGCAGAAAGTGTGTCCAGGGATAGAATTTGTCCCGATAGATCTTATCGTTTCCG
GCAAGTGTTTGTGTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3135#0      TGCTACGAGAGCCATCCAGCGCACCATTCAAACAACAACATCTGACTTGCGAGGAATCAC 60
consensus_3135#1      ------------------------------------------------------------
                                                                                  

consensus_3135#0      ACACCGATTGCACCGCGTGCGTGCGTGATTGCAGCGAAGCCGGTTACATTCGTCTTTGTG 120
consensus_3135#1      ------------------------------------------------------------
                                                                                  

consensus_3135#0      TTCCTCTGAGAAGTTTTATGTGTGTGTGTGTGTGTGCGTGCGTGCGCGTGTGTTCGTTTA 180
consensus_3135#1      -------------------------------------------CCGCGTGTGTTCGTTTA 17
                                                                  ****************

consensus_3135#0      GTGACAAAACGCGTCGTGTGCGGGCGTGATTTATTGTTTTAATCGTCCTTACCTAATTGT 240
consensus_3135#1      CTGACAAAACGCGTCCTGTGCGGGCGTGATTTAGTGTTTTAATCGTCCTTACCTAATTGT 77
                       ************** ***************** **************************

consensus_3135#0      GTGTGTGTCTCCCTACCCTGTCACAAGATGCGTCGCAAAGTGCTGTTCCGTGTGGTGTGC 300
consensus_3135#1      GTGTGTGTCTCCCTACCCTGTCACAACATGCGTCACAAAGTGCTGTTTCGTGTGGTGTGC 137
                      ************************** ******* ************ ************

consensus_3135#0      GTGTGAGTGCAATGTCCTTTTTTGTTGGCTGAGCGGCGGCATATAACGCTCCCCATGTAA 360
consensus_3135#1      GTGTGAGTGCAATGTCCCTTTTTCTTGGCTGAGCGGAGGCATACAACGCTCCCCATGTAA 197
                      ***************** ***** ************ ****** ****************

consensus_3135#0      CAGAAACGGGGGGAAAATAAGCCTTTCCTTCCGTAACATAACCCCAAAAAGCAGAAAGTG 420
consensus_3135#1      CAGCGACGGGGGGAAAATAAGCCTTTCCTTCCGTAGCATAACCCCAAAAAGCAGAAAGTG 257
                      ***  ****************************** ************************

consensus_3135#0      TGTGCGTGCGTG---TGTGCGGGGATAGAGTT---------------------------- 449
consensus_3135#1      TGTCCAGGGATAGAATTTGTCCCGATAGATCTTATCGTTTCCGGCAAGTGTTTGTGTGTG 317
                      *** *  *  *    * **    ******  *