cluster # 3144

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Anopheles gambiae
cluster # 3144 cluster # 3144 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3144#0 length = 664 sequences # 1

consensus_3144#1 length = 500 sequences # 1

consensusID : consensus_3144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [TTGCATGATGGAGCACGTACTGTAATGCGTAAGATAGCTTTAGAATCTCTTTATAATCGAGAGAAAGTACGGTTTGCTTACATCTATCAAGAAAAACAGAATGATTTCATCAGCGCTTTTTCAAAACACAATCAATCGAAAGAAACACTGCTGCAGATTATTATCTTTTGGCGTCGAGATACCAAACATATTCGTTATGAATGGGTCGATCAAACTATTCTCGAAGCAGAGAAAGTCTTAGAAAACGACACACACGATCAATATTTCAACAATACAAAACAAAAACTGGATTCAATAATTCATTGCTTGCTACGATCCACGGAAGCGCTTAGTTTTGAAACGGAAGTCAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTTCAAACNGGAAACGTATCAGTTATATACCAGAGCTGCGATTACATGAATTACGCGCTGAAAAATACAATGGGACTGGTTCGTCTCCT]

[+] EMBL BX627554             [TTGCATGATGGAGCACGTACTGTAATGCGTAAGATAGCTTTAGAATCTCTTTATAATCGAGAGAAAGTACGGTTTGCTTACATCTATCAAGAAAAACAGAATGATTTCATCAGCGCTTTTTCAAAACACAATCAATCGAAAGAAACACTGCTGCAGATTATTATCTTTTGGCGTCGAGATACCAAACATATTCGTTATGAATGGGTCGATCAAACTATTCTCGAAGCAGAGAAAGTCTTAGAAAACGACACACACGATCAATATTTCAACAATACAAAACAAAAACTGGATTCAATAATTCATTGCTTGCTACGATCCACGGAAGCGCTTAGTTTTGAAACGGAAGTCAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTTCAAACNGGAAACGTATCAGTTATATACCAGAGCTGCGATTACATGAATTACGCGCTGAAAAATACAATGGGACTGGTTCGTCTCCT]




>consensus_3144#0
TTGCATGATGGAGCACGTACTGTAATGCGTAAGATAGCTTTAGAATCTCTTTATAATCGA
GAGAAAGTACGGTTTGCTTACATCTATCAAGAAAAACAGAATGATTTCATCAGCGCTTTT
TCAAAACACAATCAATCGAAAGAAACACTGCTGCAGATTATTATCTTTTGGCGTCGAGAT
ACCAAACATATTCGTTATGAATGGGTCGATCAAACTATTCTCGAAGCAGAGAAAGTCTTA
GAAAACGACACACACGATCAATATTTCAACAATACAAAACAAAAACTGGATTCAATAATT
CATTGCTTGCTACGATCCACGGAAGCGCTTAGTTTTGAAACGGAAGTCAAGGATCTATTT
GATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAA
TACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACC
GTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAA
GACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTTCAAACNGGAAACGTATCAGTTA
TATACCAGAGCTGCGATTACATGAATTACGCGCTGAAAAATACAATGGGACTGGTTCGTC
TCCT

consensusID : consensus_3144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [CAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTCAAACGCGTATGATTAAAATAACTCGTCATCTCAGTTCCATGCCAACTGATCCTGAGGCTGGTGCATTCCTAGGTATGGACAGCTCAGATTCCGAAACATCCGTTTCGGACGTATTCGAACCAAGGATTCTTCTAGAAGAAAATTTACTCGATGGTTTACCTAATTGGCTGGATCGGTTGTTCGAAGGGACCACTCATCGATATTACATTAATTATTGGCCGGATTTTACTTCAAAATGAAACTCAATCCTTTGATAAAAGATTATCGTA]

[+] EMBL BX612121             [CAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTCAAACGCGTATGATTAAAATAACTCGTCATCTCAGTTCCATGCCAACTGATCCTGAGGCTGGTGCATTCCTAGGTATGGACAGCTCAGATTCCGAAACATCCGTTTCGGACGTATTCGAACCAAGGATTCTTCTAGAAGAAAATTTACTCGATGGTTTACCTAATTGGCTGGATCGGTTGTTCGAAGGGACCACTCATCGATATTACATTAATTATTGGCCGGATTTTACTTCAAAATGAAACTCAATCCTTTGATAAAAGATTATCGTA]




>consensus_3144#1
CAAGGATCTATTTGATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCAT
TCTGGCATTAGAATACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATC
TGTTCTTGGTACCGTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACA
TTTAGAAGAAGAAGACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTCAAACGCGTA
TGATTAAAATAACTCGTCATCTCAGTTCCATGCCAACTGATCCTGAGGCTGGTGCATTCC
TAGGTATGGACAGCTCAGATTCCGAAACATCCGTTTCGGACGTATTCGAACCAAGGATTC
TTCTAGAAGAAAATTTACTCGATGGTTTACCTAATTGGCTGGATCGGTTGTTCGAAGGGA
CCACTCATCGATATTACATTAATTATTGGCCGGATTTTACTTCAAAATGAAACTCAATCC
TTTGATAAAAGATTATCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3144#0      TTGCATGATGGAGCACGTACTGTAATGCGTAAGATAGCTTTAGAATCTCTTTATAATCGA 60
consensus_3144#1      ------------------------------------------------------------
                                                                                  

consensus_3144#0      GAGAAAGTACGGTTTGCTTACATCTATCAAGAAAAACAGAATGATTTCATCAGCGCTTTT 120
consensus_3144#1      ------------------------------------------------------------
                                                                                  

consensus_3144#0      TCAAAACACAATCAATCGAAAGAAACACTGCTGCAGATTATTATCTTTTGGCGTCGAGAT 180
consensus_3144#1      ------------------------------------------------------------
                                                                                  

consensus_3144#0      ACCAAACATATTCGTTATGAATGGGTCGATCAAACTATTCTCGAAGCAGAGAAAGTCTTA 240
consensus_3144#1      ------------------------------------------------------------
                                                                                  

consensus_3144#0      GAAAACGACACACACGATCAATATTTCAACAATACAAAACAAAAACTGGATTCAATAATT 300
consensus_3144#1      ------------------------------------------------------------
                                                                                  

consensus_3144#0      CATTGCTTGCTACGATCCACGGAAGCGCTTAGTTTTGAAACGGAAGTCAAGGATCTATTT 360
consensus_3144#1      -----------------------------------------------CAAGGATCTATTT 13
                                                                     *************

consensus_3144#0      GATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAA 420
consensus_3144#1      GATGAGAATTCGGAAAGCTCGATTATGCGCATGCTAAACCGCATCATTCTGGCATTAGAA 73
                      ************************************************************

consensus_3144#0      TACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACC 480
consensus_3144#1      TACATTTCAGATAATTTAGGACACGAACATATTCTTCCAGCGATATCTGTTCTTGGTACC 133
                      ************************************************************

consensus_3144#0      GTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAA 540
consensus_3144#1      GTAACCTTTATTCTTATCATTGGATATCTAATGTCCTACCTGCTACATTTAGAAGAAGAA 193
                      ************************************************************

consensus_3144#0      GACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTTCAAACNGGA--AACGTATCAGT 598
consensus_3144#1      GACATCCAACTTAACAAAAGCAAACGCTTGGAAAATTCAAACGCGTATGATTAAAATAAC 253
                      *************************************  **   * *  *    *  *  

consensus_3144#0      TATATACCAGAGCTGCG-ATTACATGAATTACGCGCTGAAAAATAC---AATGGGACTGG 654
consensus_3144#1      TCGTCATCTCAGTTCCATGCCAACTGATCCTGAGGCTGGTGCATTCCTAGGTATGGACAG 313
                      *    * *  ** * *     *  ***       ****    ** *     *  *    *

consensus_3144#0      TTCGTCTCCT-------------------------------------------------- 664
consensus_3144#1      CTCAGATTCCGAAACATCCGTTTCGGACGTATTCGAACCAAGGATTCTTCTAGAAGAAAA 373
                       **   * *                                                   

consensus_3144#0      ------------------------------------------------------------
consensus_3144#1      TTTACTCGATGGTTTACCTAATTGGCTGGATCGGTTGTTCGAAGGGACCACTCATCGATA 433
                                                                                  

consensus_3144#0      ------------------------------------------------------------
consensus_3144#1      TTACATTAATTATTGGCCGGATTTTACTTCAAAATGAAACTCAATCCTTTGATAAAAGAT 493
                                                                                  

consensus_3144#0      -------
consensus_3144#1      TATCGTA 500