cluster # 3168

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Anopheles gambiae
cluster # 3168 cluster # 3168 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3168#0 length = 659 sequences # 1

consensus_3168#1 length = 442 sequences # 1

consensusID : consensus_3168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CCCCGAGGGACGCTGCAGAGATCGAAGACTACTTTTCGGGTCGCACTAAAACGCTTAAGAAGCCGAAAGCGGGCACCAACGGTCAGCAGAACGACGAGAACGATGGTCAACAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGTCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGCTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAANAGGACGTGTACAATGTGCATAAGGATCTTGCGTATATATGCATAAGAACATGGGTAGTCAACCTGATTGCCACAACAACGCAAGAAANAGGACAACAATAACAATTGATCGTNTGTGACGCACGTAAGACACAATCAACTTGCTGCNACGGTAGTATATCCGCGAACTATCAACTTATTCACTTACACACCGGAAG]

[+] EMBL AL931870             [CCCCGAGGGACGCTGCAGAGATCGAAGACTACTTTTCGGGTCGCACTAAAACGCTTAAGAAGCCGAAAGCGGGCACCAACGGTCAGCAGAACGACGAGAACGATGGTCAACAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGTCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGCTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAANAGGACGTGTACAATGTGCATAAGGATCTTGCGTATATATGCATAAGAACATGGGTAGTCAACCTGATTGCCACAACAACGCAAGAAANAGGACAACAATAACAATTGATCGTNTGTGACGCACGTAAGACACAATCAACTTGCTGCNACGGTAGTATATCCGCGAACTATCAACTTATTCACTTACACACCGGAAG]




>consensus_3168#0
CCCCGAGGGACGCTGCAGAGATCGAAGACTACTTTTCGGGTCGCACTAAAACGCTTAAGA
AGCCGAAAGCGGGCACCAACGGTCAGCAGAACGACGAGAACGATGGTCAACAAATGCTGC
TGGCCAATGGTACGAAGCCAGCCGTGCTTTCGTCCGAAAAGAACAAATTGCTTCCATAAC
GAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGGTC
CCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGG
GCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATT
AAGCTGTTCATCGCTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAA
GTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAANAGGACGTGTACAATGTG
CATAAGGATCTTGCGTATATATGCATAAGAACATGGGTAGTCAACCTGATTGCCACAACA
ACGCAAGAAANAGGACAACAATAACAATTGATCGTNTGTGACGCACGTAAGACACAATCA
ACTTGCTGCNACGGTAGTATATCCGCGAACTATCAACTTATTCACTTACACACCGGAAG

consensusID : consensus_3168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CAAGAATCCGCACGAGTGGAACGACGAGAACGATGGTCAACCAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGCCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGGCGTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAAAGGAGTGTACAAGTGTGCATAAGGATCTTGCGTATATATGANTAAGAA]

[+] EMBL BX466106             [CAAGAATCCGCACGAGTGGAACGACGAGAACGATGGTCAACCAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGCCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGGCGTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAAAGGAGTGTACAAGTGTGCATAAGGATCTTGCGTATATATGANTAAGAA]




>consensus_3168#1
CAAGAATCCGCACGAGTGGAACGACGAGAACGATGGTCAACCAAATGCTGCTGGCCAATG
GTACGAAGCCAGCCGTGCTTTCGCCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAA
GCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGTCCCTATTCTGG
TTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGT
TGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCA
TCGGCGTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACT
AGGAAAACGTATTCGATATGCGTAGGAAACGGAAAGGAGTGTACAAGTGTGCATAAGGAT
CTTGCGTATATATGANTAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3168#0      CCCCGAGGGACGCTGCAGAGATCGAAGACTACTTTTCGGGTCGCACTAAAACGCTTAAGA 60
consensus_3168#1      ------------------------------------------------------------
                                                                                  

consensus_3168#0      AGCCGAAAGCGGGCACCAACGGTCAGCAGAACGACGAGAACGATGGTCAAC-AAATGCTG 119
consensus_3168#1      ---------CAAGAATCCGCA-CGAGTGGAACGACGAGAACGATGGTCAACCAAATGCTG 50
                               *  * * *  *    **  *********************** ********

consensus_3168#0      CTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGTCCGAAAAGAACAAATTGCTTCCATAA 179
consensus_3168#1      CTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGCCCGAAAAGAACAAATTGCTTCCATAA 110
                      ********************************* **************************

consensus_3168#0      CGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGGT 239
consensus_3168#1      CGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACG-T 169
                      ********************************************************** *

consensus_3168#0      CCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCG 299
consensus_3168#1      CCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCG 229
                      ************************************************************

consensus_3168#0      GGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGAT 359
consensus_3168#1      GGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGAT 289
                      ************************************************************

consensus_3168#0      TAAGCTGTTCATCGC--TCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACAC 417
consensus_3168#1      TAAGCTGTTCATCGGCGTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACAC 349
                      **************   *******************************************

consensus_3168#0      TAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAANAGGACGTGTACAAT 477
consensus_3168#1      TAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAAAGGAGTGTACA-AGT 408
                      *********************************************  *   **  * * *

consensus_3168#0      GTGCATAAGGATCTTGCGTATATATGCATAAGAACATGGGTAGTCAACCTGATTGCCACA 537
consensus_3168#1      GTGCATAAGGATCTTGCGTATATATGANTAAGAA-------------------------- 442
                      **************************  ******                          

consensus_3168#0      ACAACGCAAGAAANAGGACAACAATAACAATTGATCGTNTGTGACGCACGTAAGACACAA 597
consensus_3168#1      ------------------------------------------------------------
                                                                                  

consensus_3168#0      TCAACTTGCTGCNACGGTAGTATATCCGCGAACTATCAACTTATTCACTTACACACCGGA 657
consensus_3168#1      ------------------------------------------------------------
                                                                                  

consensus_3168#0      AG 659
consensus_3168#1      --