cluster # 3170

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Anopheles gambiae
cluster # 3170 cluster # 3170 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3170#0 length = 944 sequences # 1

consensus_3170#1 length = 783 sequences # 1

consensusID : consensus_3170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 944
fasta sequence

                              [TTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTGTGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAAACGTTCGCACACGAGGACGTTGTAACGCTGCTGCGCCAGTTGGAGGAGAAGGTACAGAAGGCGCAAACGTGCGAACTAGCGAAACCGGATACAACTCCGACCAGGACAGCGATGCGTCCAGTGGCAAAGGGACGAAAGGTCCGGCCGGTTCACCGATGTTGCCCTAAAAACTACGCCCCAAATCACCTGCCCGTGAGGCAAAACGAAACCTACGACAATAATTACTGCACTGCGATACGGGGAAGGGAGTATCATCCGCCTCATGTGTGTACGGTTTGTTTTTAATGTATCCATCAGCAATTAGGAATATTCGATCGTTCGTGTACTCTTTCCAGCGTCATCATACTATATCATACTGTGCTTGCGTGTCTGTGTATAGTATGCATCGGTTTAATTAATGCATGTCAATTATTCTGTATCGATAGCTGTAACAAAACCAGTCAACTAAATAACTAACGTTTAATTCCTGCCAATCGAATCGAAACCAATAAAGCAAGCGACTTCGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CNS09IFE             [TTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTGTGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAAACGTTCGCACACGAGGACGTTGTAACGCTGCTGCGCCAGTTGGAGGAGAAGGTACAGAAGGCGCAAACGTGCGAACTAGCGAAACCGGATACAACTCCGACCAGGACAGCGATGCGTCCAGTGGCAAAGGGACGAAAGGTCCGGCCGGTTCACCGATGTTGCCCTAAAAACTACGCCCCAAATCACCTGCCCGTGAGGCAAAACGAAACCTACGACAATAATTACTGCACTGCGATACGGGGAAGGGAGTATCATCCGCCTCATGTGTGTACGGTTTGTTTTTAATGTATCCATCAGCAATTAGGAATATTCGATCGTTCGTGTACTCTTTCCAGCGTCATCATACTATATCATACTGTGCTTGCGTGTCTGTGTATAGTATGCATCGGTTTAATTAATGCATGTCAATTATTCTGTATCGATAGCTGTAACAAAACCAGTCAACTAAATAACTAACGTTTAATTCCTGCCAATCGAATCGAAACCAATAAAGCAAGCGACTTCGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3170#0
TTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGAC
GGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTG
AGCGTGTGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACG
CTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAG
GTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTG
GACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCC
CTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAAACGTTCGCACACGAGGAC
GTTGTAACGCTGCTGCGCCAGTTGGAGGAGAAGGTACAGAAGGCGCAAACGTGCGAACTA
GCGAAACCGGATACAACTCCGACCAGGACAGCGATGCGTCCAGTGGCAAAGGGACGAAAG
GTCCGGCCGGTTCACCGATGTTGCCCTAAAAACTACGCCCCAAATCACCTGCCCGTGAGG
CAAAACGAAACCTACGACAATAATTACTGCACTGCGATACGGGGAAGGGAGTATCATCCG
CCTCATGTGTGTACGGTTTGTTTTTAATGTATCCATCAGCAATTAGGAATATTCGATCGT
TCGTGTACTCTTTCCAGCGTCATCATACTATATCATACTGTGCTTGCGTGTCTGTGTATA
GTATGCATCGGTTTAATTAATGCATGTCAATTATTCTGTATCGATAGCTGTAACAAAACC
AGTCAACTAAATAACTAACGTTTAATTCCTGCCAATCGAATCGAAACCAATAAAGCAAGC
GACTTCGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_3170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 783
fasta sequence

                              [CCCGCATCCAGGAGCTGATGGACAATCTGAAGCGTGTGCACAAGCTGAACAACTACGAACACGGCTCACCGCACACCCAGCACCTGAACGAGGAAACCTTCAAAGCCGTTATCGCACCGAACATTGTGCTGATCGCGCGCGCATTCCGCCACCAATTCGTCATACCCGACTTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTATGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAGAAGTTCGACTACGCGCAGACCTGGTTCAGCCGGATGGCGGGCAACGAGCCGCTCGGCTTCAACAATGCCGTGTTCCTGTCCGAGCGGGAGGCGGCCGATCGGAACTACGCGCTCGGGTTTTACATGCGCGAGCACNAATGCTACCCGGAGAANGCGAACCTGCGCGAGTGCATGGACTTTTACTTTCAGATCTGCTCGATGGANGGCACCT]

[+] EMBL BX627073             [CCCGCATCCAGGAGCTGATGGACAATCTGAAGCGTGTGCACAAGCTGAACAACTACGAACACGGCTCACCGCACACCCAGCACCTGAACGAGGAAACCTTCAAAGCCGTTATCGCACCGAACATTGTGCTGATCGCGCGCGCATTCCGCCACCAATTCGTCATACCCGACTTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTATGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAGAAGTTCGACTACGCGCAGACCTGGTTCAGCCGGATGGCGGGCAACGAGCCGCTCGGCTTCAACAATGCCGTGTTCCTGTCCGAGCGGGAGGCGGCCGATCGGAACTACGCGCTCGGGTTTTACATGCGCGAGCACNAATGCTACCCGGAGAANGCGAACCTGCGCGAGTGCATGGACTTTTACTTTCAGATCTGCTCGATGGANGGCACCT]




>consensus_3170#1
CCCGCATCCAGGAGCTGATGGACAATCTGAAGCGTGTGCACAAGCTGAACAACTACGAAC
ACGGCTCACCGCACACCCAGCACCTGAACGAGGAAACCTTCAAAGCCGTTATCGCACCGA
ACATTGTGCTGATCGCGCGCGCATTCCGCCACCAATTCGTCATACCCGACTTCCAGGGCT
TCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGG
CCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTATGCA
CGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCT
GCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACC
AGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAA
AGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGA
CGCTCGTCCATCCGGAGATGACGCTGGCGGAGAAGTTCGACTACGCGCAGACCTGGTTCA
GCCGGATGGCGGGCAACGAGCCGCTCGGCTTCAACAATGCCGTGTTCCTGTCCGAGCGGG
AGGCGGCCGATCGGAACTACGCGCTCGGGTTTTACATGCGCGAGCACNAATGCTACCCGG
AGAANGCGAACCTGCGCGAGTGCATGGACTTTTACTTTCAGATCTGCTCGATGGANGGCA
CCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3170#0      ------------------------------------------------------------
consensus_3170#1      CCCGCATCCAGGAGCTGATGGACAATCTGAAGCGTGTGCACAAGCTGAACAACTACGAAC 60
                                                                                  

consensus_3170#0      ------------------------------------------------------------
consensus_3170#1      ACGGCTCACCGCACACCCAGCACCTGAACGAGGAAACCTTCAAAGCCGTTATCGCACCGA 120
                                                                                  

consensus_3170#0      --------------------------------------------------TTCCAGGGCT 10
consensus_3170#1      ACATTGTGCTGATCGCGCGCGCATTCCGCCACCAATTCGTCATACCCGACTTCCAGGGCT 180
                                                                        **********

consensus_3170#0      TCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGG 70
consensus_3170#1      TCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGG 240
                      ************************************************************

consensus_3170#0      CCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTGTGCA 130
consensus_3170#1      CCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTATGCA 300
                      ******************************************************* ****

consensus_3170#0      CGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCT 190
consensus_3170#1      CGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCT 360
                      ************************************************************

consensus_3170#0      GCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACC 250
consensus_3170#1      GCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACC 420
                      ************************************************************

consensus_3170#0      AGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAA 310
consensus_3170#1      AGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAA 480
                      ************************************************************

consensus_3170#0      AGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGA 370
consensus_3170#1      AGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGA 540
                      ************************************************************

consensus_3170#0      CGCTCGTCCATCCGGAGATGACGCTGGCGGAAACGTTCGCACACGAGGACGTTGTAACGC 430
consensus_3170#1      CGCTCGTCCATCCGGAGATGACGCTGGCGGAGAAGTTCGACTACGCGCA------GACCT 594
                      ******************************* * *****   *** * *       **  

consensus_3170#0      TGCTGCGCCAGTTGGAGGAGAAGGTACAGAAGGCGCAAACGTGCGAACTAGCGAAACCGG 490
consensus_3170#1      GGTTCAGCCGGATGGCGGGCAACG------AGCCGC-----TCGGCTTCAACAATGCCGT 643
                       * *  *** * *** **  ** *      ** ***     *  *    * * *  *** 

consensus_3170#0      ATACAACTCCGACCAGGACAGCGATGCGTCCAGTGGCAAAGGGACGAAAGGTCCGGCCGG 550
consensus_3170#1      GTTCCTGTCCGAGCGGGAG------GCGGCCGATCG-----GAACTACGCGCTCGG--GT 690
                       * *   ***** * ***       *** **  * *     * ** *   *  ***  * 

consensus_3170#0      TTCACCGATGTTGCCCTAAAAACTACGCCCCAAATCACCTGCCCGTGAGGCAAAACGAAA 610
consensus_3170#1      TTTACATGCGCGAGCACNAATGCTAC-CCGGAGAANGCGAACCTGCGCGAGTGCATGGAC 749
                      ** **    *    *   **  **** **  * *   *   ** * * *     * * * 

consensus_3170#0      CCTACGACAATAATTACTGCACTGCGATACGGGGAAGGGAGTATCATCCGCCTCATGTGT 670
consensus_3170#1      TTT-------TACTTTCAGATCTGCT---CGATGGANGGCACCT---------------- 783
                        *       ** ** * *  ****    **  * * **    *                

consensus_3170#0      GTACGGTTTGTTTTTAATGTATCCATCAGCAATTAGGAATATTCGATCGTTCGTGTACTC 730
consensus_3170#1      ------------------------------------------------------------
                                                                                  

consensus_3170#0      TTTCCAGCGTCATCATACTATATCATACTGTGCTTGCGTGTCTGTGTATAGTATGCATCG 790
consensus_3170#1      ------------------------------------------------------------
                                                                                  

consensus_3170#0      GTTTAATTAATGCATGTCAATTATTCTGTATCGATAGCTGTAACAAAACCAGTCAACTAA 850
consensus_3170#1      ------------------------------------------------------------
                                                                                  

consensus_3170#0      ATAACTAACGTTTAATTCCTGCCAATCGAATCGAAACCAATAAAGCAAGCGACTTCGAAA 910
consensus_3170#1      ------------------------------------------------------------
                                                                                  

consensus_3170#0      GGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 944
consensus_3170#1      ----------------------------------