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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1052 fasta sequence
[TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAGGCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTTCTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGACAAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCAATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAGGTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGGCTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCAAACTCTCTAGTTCGTTGCACCCCGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGAATAGGCCGATCGGCATCATCCGCAAGACAGCGGA]
[+] EMBL BX621591 [TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAGGCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTTCTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGACAAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCAATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAGGTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGGCTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACC ]
[+] EMBL BM632651 [ ccGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCAAACTCTCTAGTTCGTTGCACCCCGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGAATAGGCCGATCGGCATCATCCGCAAGACAGCGGA]
consensusID : consensus_3173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[GCGAGATCGGCACGAGGCGAGGTGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAACTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGATAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG]
[+] EMBL BX619729 [GCGAGATCGGCACGAGGCGAGGTGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAACTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGATAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3173#0 TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAG 60
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 GCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTT 120
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 CTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGAC 180
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 AAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCA 240
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 ATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAG 300
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 GTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGG 360
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 CTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCT 420
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 CTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAG 480
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 CCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTA 540
consensus_3173#1 ------------------------------------------------------------
consensus_3173#0 CTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCA 600
consensus_3173#1 ----------------------GCGAGATCGGCACGAGGCG-AGGTGCGAACACTGGCCA 37
** * ** * * **************
consensus_3173#0 CTGTACACGAGGGAGAACCCGATCTACTTTATC-TTCAACGCGGAGGGCGAGGACGATCT 659
consensus_3173#1 CTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCT 97
******************************** **************************
consensus_3173#0 GCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTT 719
consensus_3173#1 GCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTT 157
****************** *****************************************
consensus_3173#0 CCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCA 779
consensus_3173#1 CCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCA 217
************************************************************
consensus_3173#0 CACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAG 839
consensus_3173#1 CACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAG 277
************************************************************
consensus_3173#0 TCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCA 899
consensus_3173#1 TCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCA 337
************************************************************
consensus_3173#0 TTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCC-AAA 958
consensus_3173#1 TTATCCC-GTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAA 396
******* ************************************************ ***
consensus_3173#0 CTCTCTAGTTCGTTGCACCCCGG-ATGGAAACAGCCTATTTATCCATGCTTGACCCCGCG 1017
consensus_3173#1 CTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCG 456
********************* * ************************************
consensus_3173#0 AATAGGCCGATCGGCATCATCCGCAAGACAGCGGA--- 1052
consensus_3173#1 A-TAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG 493
* ************ ******** ***********
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||