cluster # 3174

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Anopheles gambiae
cluster # 3174 cluster # 3174 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3174#0 length = 793 sequences # 1

consensus_3174#1 length = 749 sequences # 2

consensusID : consensus_3174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence

                              [GAATCGGCNACGAGGCATTTAGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATTGTACGTGAGCATAGGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCTGCCCAGGCGGGGCGGCGGAGTTTACCCCGATCATGTGTNNGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTTACGCTCAATACATGGTCAACCACGGTTCCAGGCTCGGTGCAGGGCTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCCGGTCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGCAATGGAAATGCAATGTTTGGAGTAGCTTAAACTCTCTAGTTTGTAAATCGATCGTCATGGATCGATGGCTGAAGGATTACCAAATGTACTGCGT]

[+] EMBL BX468594             [GAATCGGCNACGAGGCATTTAGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATTGTACGTGAGCATAGGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCTGCCCAGGCGGGGCGGCGGAGTTTACCCCGATCATGTGTNNGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTTACGCTCAATACATGGTCAACCACGGTTCCAGGCTCGGTGCAGGGCTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCCGGTCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGCAATGGAAATGCAATGTTTGGAGTAGCTTAAACTCTCTAGTTTGTAAATCGATCGTCATGGATCGATGGCTGAAGGATTACCAAATGTACTGCGT]




>consensus_3174#0
GAATCGGCNACGAGGCATTTAGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTT
ATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACA
CAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGG
TACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATTGTACGTGAGCATAGG
GAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGA
ATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCTGCCCAGG
CGGGGCGGCGGAGTTTACCCCGATCATGTGTNNGTTTACAGTTAACTTTTATCTATTGCT
TTATATTCTGCTGTTTTTACGCTCAATACATGGTCAACCACGGTTCCAGGCTCGGTGCAG
GGCTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCCGGTCGGAAAGT
AAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATAT
GTTCCTTTTATACATTATACACAGTTTGTGAAATGTAGACGTCTATTTTGAAAGTTATAA
TGAATATATTAATGTATACAAACAGCTACGAGAAATGGCAATGGAAATGCAATGTTTGGA
GTAGCTTAAACTCTCTAGTTTGTAAATCGATCGTCATGGATCGATGGCTGAAGGATTACC
AAATGTACTGCGT

consensusID : consensus_3174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 749
fasta sequence

                              [GCTGTAGTGTATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATGTACGTGAGCATAGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTACGCTCAATACATGGTCAACCACGGTCCAGGCTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTGATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGATGGAAATGCAATGTTTGGAGTAGCTAAACTCTCTAGTTTGTAAA]

[+] EMBL BX615117             [GCTGTAGTGTATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATGTACGTGAGCATAGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTACGCTCAATACATGGTCAACCACGGTCCAGGCTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTGATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATA                                                                                                                                                          ]
[+] EMBL BM632646             [   ccgGTGCATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATGTACGTGAGCATAGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTACGCTCAATACATGGTCAACCACGGTCCAGGCTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTGATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGATGGAAATGCAATGTTTGGAGTAGCTAAACTCTCTAGTTTGTAAA]




>consensus_3174#1
GCTGTAGTGTATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCT
ACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAA
ACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTAC
GGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATGTACGTG
AGCATAGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCT
CGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCC
GGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTGTTTACAGTTAACTTTTATC
TATTGCTTTATATTCTGCTGTTTTACGCTCAATACATGGTCAACCACGGTCCAGGCTCGG
TGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTGATCGG
AAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACG
TATATGTTCCTTTTATACATTATACACAGTTTGTGGAAATGTAGACGTCTATTTTGAAAG
TTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGATGGAAATGCAATGTT
TGGAGTAGCTAAACTCTCTAGTTTGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3174#0      --------GAATCGGCNACGAGGCAT-TTAGTTAGACCGTTCGCATTCATCCCAGTTTCT 51
consensus_3174#1      GCTGTAGTGTATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCT 60
                              * **  *  * *  *    ** ******************************

consensus_3174#0      ACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAA 111
consensus_3174#1      ACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAA 120
                      ************************************************************

consensus_3174#0      ACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTAC 171
consensus_3174#1      ACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTAC 180
                      ************************************************************

consensus_3174#0      GGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATTGTACGT 231
consensus_3174#1      GGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTAT-GTACGT 239
                      ***************************************************** ******

consensus_3174#0      GAGCATAGGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTG 291
consensus_3174#1      GAGCATAGG-AATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTG 298
                      ********* **************************************************

consensus_3174#0      CTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATT 351
consensus_3174#1      CTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATT 358
                      ************************************************************

consensus_3174#0      CTG-CCCAGGCGGGGCGGCGGAGTTTACCCCGATCATGTGTNNGTTTACAGTTAACTTTT 410
consensus_3174#1      CCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTG-TTTACAGTTAACTTTT 417
                      * * ******* ****************** **********   ****************

consensus_3174#0      ATCTATTGCTTTATATTCTGCTGTTTTTACGCTCAATACATGGTCAACCACGGTTCCAGG 470
consensus_3174#1      ATCTATTGCTTTATATTCTGCTGTTTT-ACGCTCAATACATGGTCAACCACGGT-CCAGG 475
                      *************************** ************************** *****

consensus_3174#0      CTCGGTGCAGGGCTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCCG 530
consensus_3174#1      CTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTG 535
                      *********** ********************************************** *

consensus_3174#0      GTCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATA 590
consensus_3174#1      ATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATA 595
                       ***********************************************************

consensus_3174#0      ATACGTATATGTTCCTTTTATACATTATACACAGTTTGTG-AAATGTAGACGTCTATTTT 649
consensus_3174#1      ATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGGAAATGTAGACGTCTATTTT 655
                      **************************************** *******************

consensus_3174#0      GAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGCAATGGAAATG 709
consensus_3174#1      GAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGG--ATGGAAATG 713
                      *************************************************  *********

consensus_3174#0      CAATGTTTGGAGTAGCTTAAACTCTCTAGTTTGTAAATCGATCGTCATGGATCGATGGCT 769
consensus_3174#1      CAATGTTTGGAGTAGCT-AAACTCTCTAGTTTGTAAA----------------------- 749
                      ***************** *******************                       

consensus_3174#0      GAAGGATTACCAAATGTACTGCGT 793
consensus_3174#1      ------------------------