cluster # 3176

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Anopheles gambiae
cluster # 3176 cluster # 3176 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3176#0 length = 563 sequences # 2

consensus_3176#1 length = 433 sequences # 1

consensusID : consensus_3176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence

                              [CCGGTGTGAGCTGTGTGTTGTGATGTGCGGTGTGATGTCAAAATGCAAGCATCAAACAACATAACGCCCGCCGAGGGGAGAAAAAAGAATAATTTATGTGAACAATGTGGGCACACATAAAATGGTGGGCAAAGCATAGAGACTCTACAGCAAAGCAAACCAACTGAACTGGACATTCCTGATGTAATGAAAAAAAGAAAAGTGAACACACACACACACAAAAGCTAAAGCAAATGTAAACTAATGACTGTTCCACGTGGTGTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTGGTGTGACCCGTCCCCTGTAGAAAGGGTACGAGCCAATAGCGCGAGAGATTTATATTTATTGATTGTCGTCGTAATGTGTCGGAGTACGTCCGGCCAGAAAAAAGGGGACCACCGGCCCCGACCACAAAAGCGTGTCGTGAAACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGTTCCCACGAGCCCGCAAGCACAAATCAACTGAAAGTGGTAAAACACAAAAAATCACTAACTATTAAGTGAAGCGAAAGAACAAA]

[+] EMBL BM632007             [CCGGTGTGAGCTGTGTGTTGTGATGTGCGGTGTGATGTCAAAATGCAAGCATCAAACAACATAACGCCCGCCGAGGGGAGAAAAAAGAATAATTTATGTGAACAATGTGGGCACACATAAAATGGTGGGCAAAGCATAGAGACTCTACAGCAAAGCAAACCAACTGAACTGGACATTCCTGATGTAATGAAAAAAAGAAAAGTGAACACACACACACACAAAAGCTAAAGCAAATGTAAACTAATGACTGTTCCACGTGGTGTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTGGTGTGACCCGTCCCCTGTAGAAAGGGTACGAGCCAATAGCGCGAGAGATTTATATTTATTGATTGTCGTCGTAATGTGTCGGAGTACGTCCGGCCAGAAAAAAGGGGACCACCGGCCCCGACCACAAAAGCGTGTCGTGAAACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGTTCCCACGAGCCCGCAAGCACAAATCAACTGAAAGTGGTAAAACACAAAAAATCACTAACTATT                    ]
[-] EMBL BX611621             [                                                                                                                                                                                                                                                                                       GGTGAAGAAAGCGAGCCGGTGGTGTGACCCGTCCCCTGTAAAAAGGGTACGAGCCAATAGCGCGAGAGATTTATATTTATTGATTGTCGTCGTAATGTGTCGGAGTACGTCCGGCCGGAAAAAAGGGGACCACCGGCCCCGACCACAAAAGCGTGTCGTCAAACTTTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGTTCCCACGAGCCCACAAGCACAAATCAATTGAAAGAGGTAAAACAC AAAAATCACTAACTATAAAGTGAAGCGAAAGAACAAA]




>consensus_3176#0
CCGGTGTGAGCTGTGTGTTGTGATGTGCGGTGTGATGTCAAAATGCAAGCATCAAACAAC
ATAACGCCCGCCGAGGGGAGAAAAAAGAATAATTTATGTGAACAATGTGGGCACACATAA
AATGGTGGGCAAAGCATAGAGACTCTACAGCAAAGCAAACCAACTGAACTGGACATTCCT
GATGTAATGAAAAAAAGAAAAGTGAACACACACACACACAAAAGCTAAAGCAAATGTAAA
CTAATGACTGTTCCACGTGGTGTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTG
GTGTGACCCGTCCCCTGTAGAAAGGGTACGAGCCAATAGCGCGAGAGATTTATATTTATT
GATTGTCGTCGTAATGTGTCGGAGTACGTCCGGCCAGAAAAAAGGGGACCACCGGCCCCG
ACCACAAAAGCGTGTCGTGAAACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGT
TCCCACGAGCCCGCAAGCACAAATCAACTGAAAGTGGTAAAACACAAAAAATCACTAACT
ATTAAGTGAAGCGAAAGAACAAA

consensusID : consensus_3176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [GTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTGGTGTGACCCGTCCTTTGTAAAAAGGGTACGAGCCAATAGCGCGAGAGAATTATATTTATTGATTGTCGTCGTAATGTGTCGGAGTACGTCTGGGCGGAAAAAAGGGGAACACGGGCTTGGACTACAAAAGCGTGTCGTCAAACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGTTCTAACGAGCTAACAAGCACAAATCAACTGAAAGAGGTAAAACACAAAAATCACTAACTATAAAAAGCAAAAAACAGTAAAACAAACAAAACTTTAGCATTAAATGAAAACCAATACAAGTAAGTAAGGGAAAAGGAAGCTAAACAAACACAAAAAGCAAGCAAGCAACTGGTCTGTCTGTATCTTCTAAAGTTTGTAGAGCGTGTAGTATGTA]

[+] EMBL BX614847             [GTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTGGTGTGACCCGTCCTTTGTAAAAAGGGTACGAGCCAATAGCGCGAGAGAATTATATTTATTGATTGTCGTCGTAATGTGTCGGAGTACGTCTGGGCGGAAAAAAGGGGAACACGGGCTTGGACTACAAAAGCGTGTCGTCAAACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGTTCTAACGAGCTAACAAGCACAAATCAACTGAAAGAGGTAAAACACAAAAATCACTAACTATAAAAAGCAAAAAACAGTAAAACAAACAAAACTTTAGCATTAAATGAAAACCAATACAAGTAAGTAAGGGAAAAGGAAGCTAAACAAACACAAAAAGCAAGCAAGCAACTGGTCTGTCTGTATCTTCTAAAGTTTGTAGAGCGTGTAGTATGTA]




>consensus_3176#1
GTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTGGTGTGACCCGTCCTTTGTAAA
AAGGGTACGAGCCAATAGCGCGAGAGAATTATATTTATTGATTGTCGTCGTAATGTGTCG
GAGTACGTCTGGGCGGAAAAAAGGGGAACACGGGCTTGGACTACAAAAGCGTGTCGTCAA
ACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGTTCTAACGAGCTAACAAGCACA
AATCAACTGAAAGAGGTAAAACACAAAAATCACTAACTATAAAAAGCAAAAAACAGTAAA
ACAAACAAAACTTTAGCATTAAATGAAAACCAATACAAGTAAGTAAGGGAAAAGGAAGCT
AAACAAACACAAAAAGCAAGCAAGCAACTGGTCTGTCTGTATCTTCTAAAGTTTGTAGAG
CGTGTAGTATGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3176#0      CCGGTGTGAGCTGTGTGTTGTGATGTGCGGTGTGATGTCAAAATGCAAGCATCAAACAAC 60
consensus_3176#1      ------------------------------------------------------------
                                                                                  

consensus_3176#0      ATAACGCCCGCCGAGGGGAGAAAAAAGAATAATTTATGTGAACAATGTGGGCACACATAA 120
consensus_3176#1      ------------------------------------------------------------
                                                                                  

consensus_3176#0      AATGGTGGGCAAAGCATAGAGACTCTACAGCAAAGCAAACCAACTGAACTGGACATTCCT 180
consensus_3176#1      ------------------------------------------------------------
                                                                                  

consensus_3176#0      GATGTAATGAAAAAAAGAAAAGTGAACACACACACACACAAAAGCTAAAGCAAATGTAAA 240
consensus_3176#1      ------------------------------------------------------------
                                                                                  

consensus_3176#0      CTAATGACTGTTCCACGTGGTGTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTG 300
consensus_3176#1      ---------------------GTGAAATATGATGTGTGGGGTGAAGAAAGCGAGCCGGTG 39
                                           ***************************************

consensus_3176#0      GTGTGACCCGTCCCCTGTAGAAAGGGTACGAGCCAATAGCGCGAGAGATTTATATTTATT 360
consensus_3176#1      GTGTGACCCGTCCTTTGTAAAAAGGGTACGAGCCAATAGCGCGAGAGAATTATATTTATT 99
                      *************  **** **************************** ***********

consensus_3176#0      GATTGTCGTCGTAATGTGTCGGAGTACGTCCGGCCAGAAAAAAGGGGACCACCGGCCCCG 420
consensus_3176#1      GATTGTCGTCGTAATGTGTCGGAGTACGTCTGGGCGGAAAAAAGGGGAACACGGGCTTGG 159
                      ****************************** ** * ************ *** ***   *

consensus_3176#0      ACCACAAAAGCGTGTCGTGAAACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGT 480
consensus_3176#1      ACTACAAAAGCGTGTCGTCAAACTCTGTTTGCTGTTTTGTAAAACTGGAAAAGGGGCGGT 219
                      ** *************** *****************************************

consensus_3176#0      TCCCACGAGCCCGCAAGCACAAATCAACTGAAAGTGGTAAAACACAAAAAATCACTAACT 540
consensus_3176#1      TCTAACGAGCTAACAAGCACAAATCAACTGAAAGAGGTAAAACACAAAAA-TCACTAACT 278
                      **  ******   ********************* *************** *********

consensus_3176#0      ATTAAGTG----AAGCGAAAGAACAAA--------------------------------- 563
consensus_3176#1      ATAAAAAGCAAAAAACAGTAAAACAAACAAAACTTTAGCATTAAATGAAAACCAATACAA 338
                      ** **  *    ** *   * ******                                 

consensus_3176#0      ------------------------------------------------------------
consensus_3176#1      GTAAGTAAGGGAAAAGGAAGCTAAACAAACACAAAAAGCAAGCAAGCAACTGGTCTGTCT 398
                                                                                  

consensus_3176#0      -----------------------------------
consensus_3176#1      GTATCTTCTAAAGTTTGTAGAGCGTGTAGTATGTA 433