cluster # 3195

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Anopheles gambiae
cluster # 3195 cluster # 3195 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3195#0 length = 557 sequences # 1

consensus_3195#1 length = 530 sequences # 1
consensus_3195#2 length = 518 sequences # 1

consensusID : consensus_3195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCGAATTCAAAGAGGCTTTCGCGCTAATGGACAACGACAAGGATGGTGTCATTGGCAAGAACGATCTCCGCTCCACCTTCGACGCCCTCGGCAAGCTGGTGTCGGACAAGGAGCTGGACGAGATGCTCGGTGAGGCTACGGGACCGCTCAACTTCACCCAGCTGCTGACGCTGTTCGCCAACCGCATGTCGGGTGGTGGCCAGGATGACGACGATGTCGTCATCAACGCGTTCAAGGCCTTCGACACCAACGGCAAGATCGATGGCGAGAAGTTCCGCTTCGCCCTGACCCACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCCAAAAACAAAACCAAAAAACTAACCTAAAAAAAATCT]

[+] EMBL BM650526             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCGAATTCAAAGAGGCTTTCGCGCTAATGGACAACGACAAGGATGGTGTCATTGGCAAGAACGATCTCCGCTCCACCTTCGACGCCCTCGGCAAGCTGGTGTCGGACAAGGAGCTGGACGAGATGCTCGGTGAGGCTACGGGACCGCTCAACTTCACCCAGCTGCTGACGCTGTTCGCCAACCGCATGTCGGGTGGTGGCCAGGATGACGACGATGTCGTCATCAACGCGTTCAAGGCCTTCGACACCAACGGCAAGATCGATGGCGAGAAGTTCCGCTTCGCCCTGACCCACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCCAAAAACAAAACCAAAAAACTAACCTAAAAAAAATCT]




>consensus_3195#0
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT
CCGCCCACGCGTCCGCCGAATTCAAAGAGGCTTTCGCGCTAATGGACAACGACAAGGATG
GTGTCATTGGCAAGAACGATCTCCGCTCCACCTTCGACGCCCTCGGCAAGCTGGTGTCGG
ACAAGGAGCTGGACGAGATGCTCGGTGAGGCTACGGGACCGCTCAACTTCACCCAGCTGC
TGACGCTGTTCGCCAACCGCATGTCGGGTGGTGGCCAGGATGACGACGATGTCGTCATCA
ACGCGTTCAAGGCCTTCGACACCAACGGCAAGATCGATGGCGAGAAGTTCCGCTTCGCCC
TGACCCACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGA
TGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGAT
CCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCCAAAAACAAAACCAAAAAAC
TAACCTAAAAAAAATCT

consensusID : consensus_3195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [CCGCCCACGCGTCCGGTTCTAGACCGCGAGGACGACCGGCGGCGTGACGGTGTTTCCATGCCCTTCTAAAGTGGCACTCGGGGAAACGGTGTTTCAATGATGTCAACTGCGCGGCGGCGGTAATCAGCCCACGTACACAGACACGTGCGATGTGCGTTGGTCGATGGAAACAGCTGTGGAAAGGAGAAGAGAAATGGGCAAAGTGAGCTGCAGTACGTAAAATCATATATATATATATATATATATATATATATATATATATACCTACATATATATATTAACATATATAAACACAATACAAAACGATATGTGGAAAAAGAAAAGAGAAACAGTAAAAACACAGAAGAAAAGTAACCAGTCGTGCGATAATATGCAAAAGAGAAAACTATCCAGTCATGATCATAAATATCCCCCAGCACTGATAATGAAGGGTTCTCCCGGCAAGAAAGCTGAAGTACAAGATTTTTCTTCTAATACGGCAAAGTGAATTCGTGTTGAGAGGAGAGACAGTTTTTACCACGTAAGAAAAA]

[+] EMBL BM637769             [CCGCCCACGCGTCCGGTTCTAGACCGCGAGGACGACCGGCGGCGTGACGGTGTTTCCATGCCCTTCTAAAGTGGCACTCGGGGAAACGGTGTTTCAATGATGTCAACTGCGCGGCGGCGGTAATCAGCCCACGTACACAGACACGTGCGATGTGCGTTGGTCGATGGAAACAGCTGTGGAAAGGAGAAGAGAAATGGGCAAAGTGAGCTGCAGTACGTAAAATCATATATATATATATATATATATATATATATATATATATACCTACATATATATATTAACATATATAAACACAATACAAAACGATATGTGGAAAAAGAAAAGAGAAACAGTAAAAACACAGAAGAAAAGTAACCAGTCGTGCGATAATATGCAAAAGAGAAAACTATCCAGTCATGATCATAAATATCCCCCAGCACTGATAATGAAGGGTTCTCCCGGCAAGAAAGCTGAAGTACAAGATTTTTCTTCTAATACGGCAAAGTGAATTCGTGTTGAGAGGAGAGACAGTTTTTACCACGTAAGAAAAA]




>consensus_3195#1
CCGCCCACGCGTCCGGTTCTAGACCGCGAGGACGACCGGCGGCGTGACGGTGTTTCCATG
CCCTTCTAAAGTGGCACTCGGGGAAACGGTGTTTCAATGATGTCAACTGCGCGGCGGCGG
TAATCAGCCCACGTACACAGACACGTGCGATGTGCGTTGGTCGATGGAAACAGCTGTGGA
AAGGAGAAGAGAAATGGGCAAAGTGAGCTGCAGTACGTAAAATCATATATATATATATAT
ATATATATATATATATATATATACCTACATATATATATTAACATATATAAACACAATACA
AAACGATATGTGGAAAAAGAAAAGAGAAACAGTAAAAACACAGAAGAAAAGTAACCAGTC
GTGCGATAATATGCAAAAGAGAAAACTATCCAGTCATGATCATAAATATCCCCCAGCACT
GATAATGAAGGGTTCTCCCGGCAAGAAAGCTGAAGTACAAGATTTTTCTTCTAATACGGC
AAAGTGAATTCGTGTTGAGAGGAGAGACAGTTTTTACCACGTAAGAAAAA

consensusID : consensus_3195#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [TGCTCAGGCAGAATCNCCACGAGGNGTAGAACGACGAGGCCGTTGTTGCCAATGGCGAGGGAAAAGCGAAATCAAAAGCTAAGACCCCGAAGGTAAAGGAGGTTAAACAGGAAGCAAAACAAAAGCCAAGAGGAAAGGAATACACCATCTTTGTTGGCAACCTTCCCAAAACGATCAAGCAGAAGGATCTGCGAGTCATGTTCAGCAAGTACGGCACCATACAGACGATTCGTCTTCGCACGAATACGGGTTTGAAAATGTTCAACAAGAAAGTGCTGTCAAAAGTGCCTTCCCTGAACGCGTACGTAGTTTACAACTCCAAGGAGGAAATGGAACAGGCCTGTCAGCTGGACGGGGAAATGGTTAGCAACAATCGCATCCGACGTGTGTCCGGCTGACAAGAAGCAGATTGGCGACGCGAAAGCGACCGTCTTCGTGGGAAATATCGCCGAGAGGCGACAACCGATAACGATCTGCACGAATTCTTCAGCCGCGTCGGGCCGGATCGAATACGGTCC]

[+] EMBL BX466468             [TGCTCAGGCAGAATCNCCACGAGGNGTAGAACGACGAGGCCGTTGTTGCCAATGGCGAGGGAAAAGCGAAATCAAAAGCTAAGACCCCGAAGGTAAAGGAGGTTAAACAGGAAGCAAAACAAAAGCCAAGAGGAAAGGAATACACCATCTTTGTTGGCAACCTTCCCAAAACGATCAAGCAGAAGGATCTGCGAGTCATGTTCAGCAAGTACGGCACCATACAGACGATTCGTCTTCGCACGAATACGGGTTTGAAAATGTTCAACAAGAAAGTGCTGTCAAAAGTGCCTTCCCTGAACGCGTACGTAGTTTACAACTCCAAGGAGGAAATGGAACAGGCCTGTCAGCTGGACGGGGAAATGGTTAGCAACAATCGCATCCGACGTGTGTCCGGCTGACAAGAAGCAGATTGGCGACGCGAAAGCGACCGTCTTCGTGGGAAATATCGCCGAGAGGCGACAACCGATAACGATCTGCACGAATTCTTCAGCCGCGTCGGGCCGGATCGAATACGGTCC]




>consensus_3195#2
TGCTCAGGCAGAATCNCCACGAGGNGTAGAACGACGAGGCCGTTGTTGCCAATGGCGAGG
GAAAAGCGAAATCAAAAGCTAAGACCCCGAAGGTAAAGGAGGTTAAACAGGAAGCAAAAC
AAAAGCCAAGAGGAAAGGAATACACCATCTTTGTTGGCAACCTTCCCAAAACGATCAAGC
AGAAGGATCTGCGAGTCATGTTCAGCAAGTACGGCACCATACAGACGATTCGTCTTCGCA
CGAATACGGGTTTGAAAATGTTCAACAAGAAAGTGCTGTCAAAAGTGCCTTCCCTGAACG
CGTACGTAGTTTACAACTCCAAGGAGGAAATGGAACAGGCCTGTCAGCTGGACGGGGAAA
TGGTTAGCAACAATCGCATCCGACGTGTGTCCGGCTGACAAGAAGCAGATTGGCGACGCG
AAAGCGACCGTCTTCGTGGGAAATATCGCCGAGAGGCGACAACCGATAACGATCTGCACG
AATTCTTCAGCCGCGTCGGGCCGGATCGAATACGGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3195#1      CCGCCCACGCGTCCGGTT-CTAGACCGCGAGGACGACCGGCGGCGTGA-CGGTGTTTCCA 58
consensus_3195#2      -TGCTCAGGCA---GAAT-CNCCAC-GAGGNGTAGAACGACGAGGC---CGTTGTTGCCA 51
consensus_3195#0      CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60
                        ** ** **    *    *    * *       *  ** *   *    **      *  

consensus_3195#1      -TGCCCTTCTAAAGTGGCACTCGGGGAAACGGTGTTTCAATGATGTCAACTGCGCGGCGG 117
consensus_3195#2      ATGGCGAGGGAAAAGCGAAATC----AAAAGCTAAGACCCCGAAGGTAAAGGAGGTTAAA 107
consensus_3195#0      CCGCCCACGCGTCCGCCGAATTCAA-AGAGGCTTTCGCGCTAATGG--ACAACGACAAGG 117
                        * *             * *     * * * *    *    * *   *    *      

consensus_3195#1      CGGTAATCAGCCCACGTACACAGACACGTGCGATGTGCGTTGGTCGATGGAAACAGCTGT 177
consensus_3195#2      CAGGAAGCAAAACAAAAGCCAAGAGGAAAGGAATACACCATCTTTGTTGGCAACCTTCCC 167
consensus_3195#0      ATGGTGTCATTGGCAAGAACGATCTCCGCTCCACCTTCGACGCCCTCGGCAAGCTGGTGT 177
                        *    **            *          *    *          *  * *      

consensus_3195#1      GGAAAGGAGAAGAGAAATGGGCAAAGTGAGCTGCAGTACGTAAAATCATATATATATATA 237
consensus_3195#2      AAAACGATCAAGCAGAAGGATCT--GCGAGTCATGTTCAGCAAGTACGGCACCATACAGA 225
consensus_3195#0      CGGACAAGGAGCTGGACGAGATGCTCGGTGAGGCTACGGGACCGCTCAACTTCACCCAGC 237
                         *     *     *           * *         *      *      *   *  

consensus_3195#1      TATATATATATATATATATATATATACCTACATATATATATTAACATATATAAACACAAT 297
consensus_3195#2      CG-ATTCGTCTTCGCACGAATACGGGTTTGAAAATGTTCAACAAGA-----AAGTGCTGT 279
consensus_3195#0      TGCTGACGCTGTTCGCCAACCGCATGTCGGGTGGTGGCCAGGATGACGA--CGATGTCGT 295
                                                        *    *  *  *             *

consensus_3195#1      ACAAAACGATATGTGGAAAAAGAAAAGAGAAACAGTAAAAACACAGAAGAAAAGTAACCA 357
consensus_3195#2      -CAAAAGTGCCTTCCCTGAACGCGTACGTAGTTTACAACTCCAAGGAGGAAATGGAACAG 338
consensus_3195#0      -CATCAACGCGTTCAAGGCCTTCG-ACACCAACGGCAAGATCGATGGCGAGAAGTTCCGC 353
                       **  *     *             *          **   *   *  ** * *   *  

consensus_3195#1      GTCGTGC-GATAATATGCAAAAGAGAAAAC--TATCCAGT-CATGATCATAAATATCCCC 413
consensus_3195#2      GCCTGTC-AGCTGGACGGGGAAATGGTTAG--CAAC-AAT-CGC-ATCCGACGTGTGTCC 392
consensus_3195#0      TTCGCCCTGACCCACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTC 413
                        *   *         *       *   *    * * *   *    *      *     *

consensus_3195#1      CAGC-ACTGATAATGAAGGGTTCTCCCGGCAAGAAAGCTGAAGT----ACAAGATTTTTC 468
consensus_3195#2      G----GCTGACAA-GAAGCAGATTGGCGACGCGAAAGCGACCGTCTTCGTGGGAAATATC 447
consensus_3195#0      GATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTC 473
                             **   *   *         *  *    *  *    *         *     **

consensus_3195#1      TTCTAATACGGCAAAGTGAATTCGTGTTGAGAGGAGAGACAGTTTTTACCACGTAAGAAA 528
consensus_3195#2      GCCGAGAGGCGACAACCGATAACGATCTGCACGAATTCTTCAGCCGCGTCGGGCCGGATC 507
consensus_3195#0      ACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCCAAAAACAAAACC 533
                        *          *             *                             *  

consensus_3195#1      AA---------------------- 530
consensus_3195#2      GAATACGGTCC------------- 518
consensus_3195#0      AAAAAACTAACCTAAAAAAAATCT 557
                       *