cluster # 3198

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Anopheles gambiae
cluster # 3198 cluster # 3198 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3198#0 length = 692 sequences # 1

consensus_3198#1 length = 674 sequences # 2

consensusID : consensus_3198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [GCATTTTTATTCTTCCTCTCGCGTTCTCAGTGTTCCAGAAGCACACTTTTAAAAGCAAACTTGAGTACGACGATACACATAATTGTATAAAATAAAACAGGAATACTCCTTTTCCTCCTTCTTCTCCTTCACACAGTGATTAGAGAGTTAGAGAGTGTGTGTTTGTGTGTCTGTGAGTGTGTAAATGCTTGATTGTTTCAGTGTTGTAATGAATTGTTAAACAAATGTGTGTCTCTCTTTCTCTCATCACCATCTTCAACCACAGGGAAAAAGAAATACAATCGACAAAAAAATTGACACATTCACACACACACACACACACACACACGTTCATTGAAAGCTTAAGGTATTAATTTTCCACGCTAATTGTAGCCATGTACTTTACGATTAAAATCACAACTGGCAGTGGTCGATGATAGAAGGTGCGGGCTGGTGGTGGCGGGGTGCTACTAATAAAACACAAAAATGCACATTCACGAAACACGACTCCGCTCCCCTCTTTTCTTGCTTCTCTCTCTCCCCCTCTTCCTCTCACTCTCTCATACCACCTTTCCACTTCCGGCGATCATTACTACTTTGTTCCGATTGCTGGAGAANAGATTAGGATGGAAGCCTCTTCTTCCCCCCTCGCAACTTCTTCATTAATCATGCACACGTACACACATACATACACATGCACACGGTTCAGGGCG]

[+] EMBL BX621481             [GCATTTTTATTCTTCCTCTCGCGTTCTCAGTGTTCCAGAAGCACACTTTTAAAAGCAAACTTGAGTACGACGATACACATAATTGTATAAAATAAAACAGGAATACTCCTTTTCCTCCTTCTTCTCCTTCACACAGTGATTAGAGAGTTAGAGAGTGTGTGTTTGTGTGTCTGTGAGTGTGTAAATGCTTGATTGTTTCAGTGTTGTAATGAATTGTTAAACAAATGTGTGTCTCTCTTTCTCTCATCACCATCTTCAACCACAGGGAAAAAGAAATACAATCGACAAAAAAATTGACACATTCACACACACACACACACACACACACGTTCATTGAAAGCTTAAGGTATTAATTTTCCACGCTAATTGTAGCCATGTACTTTACGATTAAAATCACAACTGGCAGTGGTCGATGATAGAAGGTGCGGGCTGGTGGTGGCGGGGTGCTACTAATAAAACACAAAAATGCACATTCACGAAACACGACTCCGCTCCCCTCTTTTCTTGCTTCTCTCTCTCCCCCTCTTCCTCTCACTCTCTCATACCACCTTTCCACTTCCGGCGATCATTACTACTTTGTTCCGATTGCTGGAGAANAGATTAGGATGGAAGCCTCTTCTTCCCCCCTCGCAACTTCTTCATTAATCATGCACACGTACACACATACATACACATGCACACGGTTCAGGGCG]




>consensus_3198#0
GCATTTTTATTCTTCCTCTCGCGTTCTCAGTGTTCCAGAAGCACACTTTTAAAAGCAAAC
TTGAGTACGACGATACACATAATTGTATAAAATAAAACAGGAATACTCCTTTTCCTCCTT
CTTCTCCTTCACACAGTGATTAGAGAGTTAGAGAGTGTGTGTTTGTGTGTCTGTGAGTGT
GTAAATGCTTGATTGTTTCAGTGTTGTAATGAATTGTTAAACAAATGTGTGTCTCTCTTT
CTCTCATCACCATCTTCAACCACAGGGAAAAAGAAATACAATCGACAAAAAAATTGACAC
ATTCACACACACACACACACACACACACGTTCATTGAAAGCTTAAGGTATTAATTTTCCA
CGCTAATTGTAGCCATGTACTTTACGATTAAAATCACAACTGGCAGTGGTCGATGATAGA
AGGTGCGGGCTGGTGGTGGCGGGGTGCTACTAATAAAACACAAAAATGCACATTCACGAA
ACACGACTCCGCTCCCCTCTTTTCTTGCTTCTCTCTCTCCCCCTCTTCCTCTCACTCTCT
CATACCACCTTTCCACTTCCGGCGATCATTACTACTTTGTTCCGATTGCTGGAGAANAGA
TTAGGATGGAAGCCTCTTCTTCCCCCCTCGCAACTTCTTCATTAATCATGCACACGTACA
CACATACATACACATGCACACGGTTCAGGGCG

consensusID : consensus_3198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence

                              [CCCCGCGAGTGCACGGCACCATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCAACAAGTCGCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCGAAAACCCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGCGTGCTAAAGCCCCTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAGTGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAATGGCACAAGCAGTGCTTCAAGTGCGGAATGTGCGGCAAGATGCTCGACTCCACAAACTGTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCACGGCCGCAAGTACGGACCGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGTTTCAGGGCGAGGGCAAGTAAATGCTCGTGCCACGTGTACTAGCATCACAAACCCGTTCATTTAAGTAAGAGTCCCCCCTGCGGAATAGCGCGAAGAAGCTTGCACCGTGCAGAAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTCCCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT]

[+] EMBL BM617314             [  CCGCGAGTGCACGGCACCATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCAACAAGTCGCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCGAAAACCCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGCGTGCTAAAGCCCCTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAGTGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAATGGCACAAGCAGTGCTTCAAGTGCGGAATGTGCGGCAAGATGCTCGACTCCACAAACTGTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCACGGCCGCAAGTACGGACCGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGTTTCAGGGCGAGGGCAAGTAAATGCTCGTGCCACGTGTACTAGCATCACAAACCCGTTCATTTAAGTAAGAGTCCCCCCTGCGGAATAGCGCGAAGAAGCTTGCACCGTGCAGAAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTCCCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT]
[+] EMBL BM648582             [ccgacCGAGTGCACGGCACCATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCAACAAGTCGCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCGAAAA CCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGCGTGCTAAAGCCCCTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAGTGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAATGGCACAAGCAGTGCTTCAAGTGCGGAATGTGCGGCAAGATGCTCGACTCCACAAACTGTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCACGGCCGCAAGTACGGACCGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGTTTCAGGGCGAGGGCAAGTAAATGCTCGTGCCACGTGTACTAGCATCACAAACCCGTTCATTTAAGTAAGAGTCCCCCCTGCGGAATAGCGCGAAGAAGCTTGCACCGTGCAGAAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTCCCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT]




>consensus_3198#1
CCCCGCGAGTGCACGGCACCATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCAAC
AAGTCGCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCGAAAA
CCCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGCGTGC
TAAAGCCCCTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAGTGCCCCAAG
TGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAATGGCACAAG
CAGTGCTTCAAGTGCGGAATGTGCGGCAAGATGCTCGACTCCACAAACTGTGCAGAGCAC
GAAAACGAGCTGTACTGCAAGAACTGCCACGGCCGCAAGTACGGACCGAAGGGCTACGGT
TTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGTTTCAGGGCGAGGGC
AAGTAAATGCTCGTGCCACGTGTACTAGCATCACAAACCCGTTCATTTAAGTAAGAGTCC
CCCCTGCGGAATAGCGCGAAGAAGCTTGCACCGTGCAGAAACCAAAAACCCAACAACATC
TCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTCCCCGTCTATTGAGGGAAGTGTG
GAAGCGATGAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3198#0      GCATTTTTATTCTTCCTCTCGCGTTCTCAGTGTTCCAGAAGCACACTTTTAAAAGCAAAC 60
consensus_3198#1      -CCCCGCGAGTGCACGGCAC-CATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCA 58
                       *      * *   *  * * * *  *** *  * *  *  ***  *  *  *****   

consensus_3198#0      TTGAGTACGACGATACACATAATTGTATAAAATAAAACAGGA--ATACTCCTTTTCCTCC 118
consensus_3198#1      ACAAGTC--GCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCG 116
                         ***    **  ** *   * ** *  *  * *  * * *  *  ***      * * 

consensus_3198#0      TTCTTCTCCTTCACACAGTGATTAGAGAGTTAGAGAGTGTGTGTTTGTGTGTCTGTGAGT 178
consensus_3198#1      AAAACCCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGC 176
                           * **  *   *    ***   **    * *  * *  ****  **       ** 

consensus_3198#0      GTGTAAATGCTTGATTGTTTCAGTGTTGTAATGAATTGTTAAACAAATGTGTGTCTCTCT 238
consensus_3198#1      GTGCTAAAGCCC-----CTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAG 231
                      ***  ** **        * *** *     ***  **   *  **  **     * *   

consensus_3198#0      TTCTCTCATCACCATCTTCAACCACAGGGAAAAAGAAATACAATCGACAAAAAAATTGAC 298
consensus_3198#1      TGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAA 291
                      * * *  *   *             * *         *     *** *  *  **   * 

consensus_3198#0      ACATTCACACACACACACACACACACACACGTTCATTGAAA-GCTTAAGGTATTAATTTT 357
consensus_3198#1      TGGCACAAGCAGTGCTTCAAGTGCGGA-ATGTGCGGCAAGATGCTCGACTCCACAAACT- 349
                           **  **      **    *  * * ** *    * * ***  *      **  * 

consensus_3198#0      CCACGCTAATTGTAGCCATGTACTTTACGATTAAAATCACAACTGGCAGTGGTCGATGAT 417
consensus_3198#1      --GTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCAC-GGCCGCAAGTACGGAC 406
                          **  *        * *  ** ***    * **   * ** *** *        ** 

consensus_3198#0      AGAAGG--TGCGGGCT-GGTGGTGGCGGGGTGCTACTAATAAAACACAAAAATGCACATT 474
consensus_3198#1      CGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGT 466
                       *****  * ***  * ***** ****  *     **    *   ***     ** ** *

consensus_3198#0      CACGAAACACGACTCCGCTCCCCTCTTTTCTTGCTTCTCTCTCTCCCCCTCTTCCTCTCA 534
consensus_3198#1      TTCAGGGCGAGG----GCAAGTAAATGCTCGTGCCACGTGTACTAGCA-TCACAAACCCG 521
                        *    *  *     **       *  ** ***  *     **  *  **     * * 

consensus_3198#0      CTCTCTCATACCACCTTTCCACTTCCGGCGATCATTACTACTTTGTTCCGATTGCTGGAG 594
consensus_3198#1      TTCATTTAAGTAAGAGTCCCCCCTGCGG--AATAGCGCGAAGAAGCTTGCACCG-TGCAG 578
                       **  * *    *   * ** * * ***  *  *   * *    * *   *  * ** **

consensus_3198#0      AANAGATTAGGATGGAAGCCTCTTCTTCCCCCCTCGC-AACTTCTTCATTAATCATGCAC 653
consensus_3198#1      AAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTC 638
                      **   *  *       * * *** * *      * ** **      * *   **  ** *

consensus_3198#0      ACGTACACACATACATACACATGCACACGGTTCAGGGCG 692
consensus_3198#1      -CCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT-- 674
                       *      *   *   *    ** *  ** *  *