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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTTGCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTTCCCGTTCGTTTTTAGGACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTACATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTATTCATTGAATATCTTCTTCTTCTTCTTTGGCACAACAACCGTTGTCGGTCATGGCCTGCCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGATAGTCAGTCCTACCGTATATGGGGGCACGGTCTATTCGGAGCTTGAACCCATGACGGGCATGTTATTTTTTCGTACGAGTTGACGACTGTACCACCAGACCGGCCCATTTTATTGAATATACATACAATAAACATATCTTACTAAACATTTGTGAGCAGTAACTACAGTAATAACCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTTCAATTCATGCAAACATTTTTTTTTTCTCTAC]
[+] EMBL BM595239 [CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTTGCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTTCCCGTTCGTTTTTAGGACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTACATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTATTCATTGAATATCTTCTTCTTCTTCTTTGGCACAACAACCGTTGTCGGTCATGGCCTGCCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGATAGTCAGTCCTACCGTATATGGGGGCACGGTCTATTCGGAGCTTGAACCCATGACGGGCATGTTATTTTTTCGTACGAGTTGACGACTGTACCACCAGACCGGCCCATTTTATTGAATATACATACAATAAACATATCTTACTAAACATTTGTGAGCAGTAACTACAGTAATAACCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTTCAATTCATGCAAACATTTTTTTTTTCTCTAC]
consensusID : consensus_3218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGCGGACGCGTGGGCTAAGGCATAGCATCGTTGAGTTTGAGTTTATAGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATTTTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTTTGGCGGCTTCATTTTTTATCATATTTTACATTATGTTACTGTGCTGGTTTGTTTCAGGATACCAATTGCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGATATCACGATTAATTTTCCCGGAGAAAACAACAACAATCGAGTATTCAGCATTGTCAGTAGCTCTGGTAACAATAATCCATCTATGTTCGATTGGATAGGAGGCAACGGCGCCAACAAAGCACCTACAATATTGCTGGGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGATGATGATACCTTACCTTCAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAATTCGAGATAATATAGCAGTTTACGGAGACGATTGGCACAGCGATATTCATCATCCGTGTAGAACGGATTTACGCGTTCACTGAACTCTTCGTGCACGTACGGGTGGGCTGGCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC]
[+] EMBL BM606799 [CCGCGGACGCGTGGGCTAAGGCATAGCATCGTTGAGTTTGAGTTTATAGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATTTTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTTTGGCGGCTTCATTTTTTATCATATTTTACATTATGTTACTGTGCTGGTTTGTTTCAGGATACCAATTGCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGATATCACGATTAATTTTCCCGGAGAAAACAACAACAATCGAGTATTCAGCATTGTCAGTAGCTCTGGTAACAATAATCCATCTATGTTCGATTGGATAGGAGGCAACGGCGCCAACAAAGCACCTACAATATTGCTGGGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGATGATGATACCTTACCTTCAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAATTCGAGATAATATAGCAGTTTACGGAGACGATTGGCACAGCGATATTCATCATCCGTGTAGAACGGATTTACGCGTTCACTGAACTCTTCGTGCACGTACGGGTGGGCTGGCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC]
consensusID : consensus_3218#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[AGAATCGCCCGAGGTTCGATCGTATTTAAAACCGTCTCGTCATAGAAAAGTTTTCCGGTTCGAAAACCATTCCCCCCCGCTGTGTGTTGATTGAAGTAGTATGGAACTTGATGCATTTTTTTAGTGGCGTGCTGGTTTCTTCTTTTAATTTGCACGAAGCGAGATCGATGAACAACATTCCAACGGTTTAACGTGCATTCCGGAATAAAGTAAGTGTTTTCGAAACCTTTTTTTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTACGCTTAAACGAACGGGGGAGGAAACTTAGCCTTCACCGTTGAACGAAAAGGTAGACGTTTATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACTTCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCCGTATAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGTCGAATTGGCTGTGAAAGACGCAAACGGA]
[+] EMBL AL930377 [AGAATCGCCCGAGGTTCGATCGTATTTAAAACCGTCTCGTCATAGAAAAGTTTTCCGGTTCGAAAACCATTCCCCCCCGCTGTGTGTTGATTGAAGTAGTATGGAACTTGATGCATTTTTTTAGTGGCGTGCTGGTTTCTTCTTTTAATTTGCACGAAGCGAGATCGATGAACAACATTCCAACGGTTTAACGTGCATTCCGGAATAAAGTAAGTGTTTTCGAAACCTTTTTTTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTACGCTTAAACGAACGGGGGAGGAAACTTAGCCTTCACCGTTGAACGAAAAGGTAGACGTTTATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACTTCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCCGTATAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGTCGAATTGGCTGTGAAAGACGCAAACGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3218#1 ------------CCGCGGACGCGTGGGCTAAGGCATAGC-ATCGTTGAGTTTGAGTTTAT 47
consensus_3218#2 ------------------------------------------------------------
consensus_3218#0 CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTT 60
consensus_3218#1 AGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATT 107
consensus_3218#2 ----------------------------------------------AGAATCGCCCGAGG 14
consensus_3218#0 GCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTT 120
* *
consensus_3218#1 TTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTT-TGGCGGCT-T 165
consensus_3218#2 TTCGATCGTATTTAA---AACCGTCTCGTCATAGAAAAGTTTTCCGGTT-CGAAAACCAT 70
consensus_3218#0 CCCGTTCGTTTTTAG---GACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTAC 177
* * * * * * *
consensus_3218#1 -CATTTTTTATCATATTTTACATT-ATGTTACTGTGCTGGTTTGTTTCAGGATACCAATT 223
consensus_3218#2 -TCCCCCCCGCTGTGTGTTG-ATT-GAAGTAGTATGG-AACTTGATGCATTTTTTTAGTG 126
consensus_3218#0 ATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTA 237
* * * *** * * * * * * *
consensus_3218#1 GCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGAT-ATCACGATTAATTTTCCCGGA 282
consensus_3218#2 GC------GTGCTGGTTTCTTCTTTTAATTTGCACGA--AGCGAGATCGAT------GAA 172
consensus_3218#0 TTCATTGAATATCTTCTTCTTCTTCT--TTGGCACAACAACCGTTGTCGGTCATGGCCTG 295
* * * * * * * *
consensus_3218#1 GAAAACAACAACAATCGAGT-ATTCAGCATTGTCAGTAGCTC-TGGTAACAATAATCCAT 340
consensus_3218#2 CAACATTCCAACGGTTTAAC-GTGCATTCCGG--AATAAAGT-AAGTGTTTTCGAAACCT 228
consensus_3218#0 CCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGA 355
* ** * * * * **
consensus_3218#1 CTAT--GTTCGATTGGATAGGAGGCAACGGCGCC--AACAAAGCACCTACAATATTGCTG 396
consensus_3218#2 TTTT--TTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTAC 286
consensus_3218#0 TAGTCAGTCCTACCGTATATGGGGGCACGGTCT----ATTCGGAGCTTGAACCCATGACG 411
* * * * * ** * * * *
consensus_3218#1 GGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGAT 456
consensus_3218#2 GCTTAAACGAACGGGGGAGGAAACTTAGCC--TTCACCGTTGAACGAAAAGGTAGACGTT 344
consensus_3218#0 GGCATGTTATTTTTTCGTACGA-GTTGACGACTGTACCACCAGACCGGCCCATTTTATTG 470
* * * ** *
consensus_3218#1 GATG-ATACCTTACCTT--CAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAA 513
consensus_3218#2 TATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACT 404
consensus_3218#0 AATATACATACAATAAACATATCTTACTAAACA-TTTGTGAGCAGTAACTACAGTAATAA 529
** * * * * * * *
consensus_3218#1 TTCGA--GATAATATAGCAGTTT---ACGGAGACGATTGGCACAGCGATATTCATCATCC 568
consensus_3218#2 TCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCC 464
consensus_3218#0 CCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTA 589
* * ** * * * * * ** * *
consensus_3218#1 GTG-TAGAACGGATTTACGCGT--TCACTGAAC--TCTTCGTGCACGTACGGGTGGGCTG 623
consensus_3218#2 GTA-TAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGT-CGAATTGGCTG 522
consensus_3218#0 CTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTT 649
* ** * * * * * **
consensus_3218#1 GCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC 668
consensus_3218#2 TGAAAGACGCAAACGGA---------------------------- 539
consensus_3218#0 CAATTCATGCAAACATTTTTTTTTTCTCTAC-------------- 680
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||