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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence
[TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGCTCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCATTTTGGAGACGCTA-CCTACCTTCGGTGCTCTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCATAATGAAAGCGCATACTTTG]
[+] EMBL CNS093SR [TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGCTCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCATTTTGGAGACGCTA CCTACCTTCGGTGCTCTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCATAATGAAAGCGCATACTTTG]
[-] EMBL CNS093SS [ gtTTTTATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCCTA CTTCGGTGCTTTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGGGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACCCCGCCTAAAGTGTCCGCATt ]
consensusID : consensus_3224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[GGCCAAGAATCGGCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGTTTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAGCTGCTTTGGATCGCGGGATTGTACTAAAGTTTATGTTTCAAAATTTTAGCAAACGGCAAAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTGTTTCCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAAGATTCAAAACTTTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACATCGTCCCCGGTGTCGACAAACTGGCAAATTATCAAGCACGAGGCGTAGCAGGAGTCTCATTACTTCTTAAAGCGGAAGGAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACATTCACGATACGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATTTATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGATAGTGATGATGATCTGAAAGACGAAATATGTCATATCAACCATACTCTTCATATATGTGCAAGTGGAGTGCAACCTTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACCTTAGCAAGAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGATTCAGACGATACAACATTGAATGAGAATAGCATTCAAAACGATTANAATCGTACCAATTGATTTTAGC]
[+] EMBL BX467876 [GGCCAAGAATCGGCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGTTTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAGCTGCTTTGGATCGCGGGATTGTACTAAAGTTTATGTTTCAAAATTTTAGCAAACGGCAAAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTGTTTCCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAAGATTCAAAACTTTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACATCGTCCCCGGTGTCGACAAACTGGCAAATTATCAAGCACGAGGCGTAGCAGGAGTCTCATTACTTCTTAAAGCGGAAGGAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACATTCACGATACGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATTTATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGATAGTGATGATGATCTGAAAGACGAAATATGTCATATCAACCATACTCTTCATATATGTGCAAGTGGAGTGCAACCTTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACCTTAGCAAGAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGATTCAGACGATACAACATTGAATGAGAATAGCATTCAAAACGATTANAATCGTACCAATTGATTTTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3224#0 TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGC 60
consensus_3224#1 -----GGCCAAGAATCG----GCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGT 51
* ** ** ** ** ** * * * * *** *** ** *
consensus_3224#0 TCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATT 120
consensus_3224#1 TTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAG-------- 103
* * * * *** * *** * * * * ** * * *
consensus_3224#0 TTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACC 180
consensus_3224#1 CTGCTTTGGATCGCGGGATTGTACTAAAGTTTA--TGTTTCAAAATTTTAGCAAACGGCA 161
*** * * ** ** * ** ** * ** ** ** * ** * *
consensus_3224#0 AAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAA 240
consensus_3224#1 AAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTG 221
** * ** * * * * * * **** **** **
consensus_3224#0 TTCGTAGACCGTCGTAGGACCCACAGAAGCGAAA-GCGT-TTGCCAAGGATGCTTTCATT 298
consensus_3224#1 TTT--------CCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAA 273
** * **** * ** * * * * *** *** ** ** *
consensus_3224#0 AATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAAC-CGT 357
consensus_3224#1 GATTCAAAACT----TTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACAT 329
** * *** ** ** * ** * ** *** **** * *** * *
consensus_3224#0 AAACGATGCCAATTAGCATTTTGGAGACGCTACCTACCTTCGGTGCTCTCAGTAGCTTCC 417
consensus_3224#1 CGTCCCCGGTG-TCGACAAACTGGCAA-ATTATCAAGCACGAGGCGTAGCAGGAGTCTCA 387
* * * ** *** * ** * * * * * *** ** **
consensus_3224#0 GGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATT 477
consensus_3224#1 TTACTTCTTAAAGCGGAAG--GAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACA 445
* *** *** * * ** * *** * * * * * * ***
consensus_3224#0 GACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCA 537
consensus_3224#1 TTCACGATA-CGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATT 504
* * * * ** ** * * * * * **
consensus_3224#0 TAAGTTCTACTCTCCGGTCAG--GGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTAC 595
consensus_3224#1 TATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGAT---------AGTGAT 555
** ** * ** * **** *** * * ****** * * * *
consensus_3224#0 ACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGG 655
consensus_3224#1 GATGATCTGAAAGACGAAATAT-GTCA--TATCAACCATAC-TCTTCATATATGTGCAAG 611
** * * * **** **** * * * * * * *** *
consensus_3224#0 GGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCG-GAACG 714
consensus_3224#1 TGGAGTGCAACC-TTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACC 670
* * * ** * * * ** * ** * **** ** *** ****
consensus_3224#0 ACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGAT-GTATTATTTGTCATT 773
consensus_3224#1 TTAGCAA-GAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGA 729
* ** * *** * * * * * * ** * ** * * ***
consensus_3224#0 TGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACAC 833
consensus_3224#1 T--TCAGACGATACAACA---TTGAATGA-GAATAGCATTCAA--AACGATTANAATCGT 781
* *** ** * ** * * ** ** ** * **** * ** * * * *
consensus_3224#0 ATTTAGCACGCATAATGAAAGCGCATACTTTG 865
consensus_3224#1 ACCAATTGATTTTAGC---------------- 797
* * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||