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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 970 fasta sequence
[AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATA-TGACCGCCGTCA-CGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGA-GACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTT-CCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCGGG]
[+] EMBL CNS09JK7 [AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATA TGACCGCCGTCA CGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGA GACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTT CCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCGGG]
[+] EMBL CNS095GY [ TATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATACTGACCGCCGTCAGCGCAGCTTGGTCAACAAACCCTCCACGTCTGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGACGACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTAAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTTATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTTCCCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTTACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATAATCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAAC ]
consensusID : consensus_3226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[CCGTTCTCTTACGTCAGGTACAAAATTTCTCTACGAGCCGCGCCTGGACCAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGCCCAATGCCGCTCGCGTTGTTCATGCCGTTTTGCAATCGTTTTTTTTTTTTTTTTTATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGTGCTGGTCGGAGGCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGGAGGTGCACCCACCGGAGCTGCCATGGAACCATAAGGGTATGCTCGACTCGCTCGACCACGCGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGTGTGTGCGGCCTGCCACTCGATGCGCTTCATCGCCTACCGCAATCTGGTCGGCGTGTCGCACACCGAGGCGGAAGCGAAGGCCGAGGCGGAGGAGATCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTACTTCATGCGGCCCGGCAAGCTGTCCGACTATTTCCCGAGCCCGTACCCGAACGAGGAAGCGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCACGTCACGGTGGCGAGGACTATCTGTTCGCGCTGCTCACCGGC]
[+] EMBL BM651561 [CCGTTCTCTTACGTCAGGTACAAAATTTCTCTACGAGCCGCGCCTGGACCAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGCCCAATGCCGCTCGCGTTGTTCATGCCGTTTTGCAATCGTTTTTTTTTTTTTTTTTATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGTGCTGGTCGGAGGCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGGAGGTGCACCCACCGGAGCTGCCATGGAACCATAAGGGTATGCTCGACTCGCTCGACCACGCGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGTGTGTGCGGCCTGCCACTCGATGCGCTTCATCGCCTACCGCAATCTGGTCGGCGTGTCGCACACCGAGGCGGAAGCGAAGGCCGAGGCGGAGGAGATCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTACTTCATGCGGCCCGGCAAGCTGTCCGACTATTTCCCGAGCCCGTACCCGAACGAGGAAGCGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCACGTCACGGTGGCGAGGACTATCTGTTCGCGCTGCTCACCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3226#0 AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAAC 60
consensus_3226#1 ------------------------------------------------------------
consensus_3226#0 CTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGA 120
consensus_3226#1 ------------------------------------------------------------
consensus_3226#0 CTCCTACTTGATATGACCGCCGTCACGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAG 180
consensus_3226#1 -----CCGTTCTCTTACGTCAGGTACAAAATTTC-TCTACGAG----CCGCGCCTGG-AC 49
* * * * ** * * ** * ** ** ** * ** ** * ** *
consensus_3226#0 TATGGATCC--AGCTTGTCTGACAGGAGGATCTTCGATGGAGACAATTTCGATACGGGGC 238
consensus_3226#1 CAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGC 109
* * * * ** * *** * * * * * * *** * ** * **
consensus_3226#0 GTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTC 298
consensus_3226#1 CCAATGCCG---CTCGCGTTGTTCA-TGCC-GTTTTGCAATCGTTTTTTTTTTTTTTTTT 164
** * * * * *** *** **** **** *** ** *** **
consensus_3226#0 ATGATGT--TGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTA 356
consensus_3226#1 ATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGT------GCTGGTCGGA-------G 211
** *** * *** * ** ** *** * ** *** *
consensus_3226#0 CTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTA 416
consensus_3226#1 GCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGG------ 265
***** * * * * * * **** * ** * ***
consensus_3226#0 ATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAG 476
consensus_3226#1 AGGTG-CACCCACCGGAGCTGCCATGGAACCATAAGGG---TATGCTCGA-CTCGCTCGA 320
* ** * ** * * ** * ** * *** * ** * * ** * *
consensus_3226#0 CGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCA 536
consensus_3226#1 CCACG--CGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGT-GTGTGCGGCCTGCCA 377
* * * ** * * * * * * * * * * * * * * **
consensus_3226#0 CTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTT------CGAAACATGAA 590
consensus_3226#1 CTCGATGCGCTTCATCGCCTACCGCAA-TCTGGTCGGCGTGTCGCACACCGAGGCGGAAG 436
** *** ***** ** ** ** * * *** * * * * *** * *
consensus_3226#0 T--AGGCTGAAGAAGATCAAACTCCTTGCCTGCTACC-TCTACATGTATTCCACGATCTG 647
consensus_3226#1 CGAAGGCCGAGGCGGAGGAGA-TCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTAC 495
**** ** * ** * * *** * ** ** ** * * * *
consensus_3226#0 CCCCCATGGCAAGG---GCCGTACGGAGTACTTCCTGGGATTGAGAAGGACCAACCGAAA 704
consensus_3226#1 TTCATGCGGCCCGGCAAGCTGTCCG-ACTATTTCCCGAGCCCGTACCCGAACGAG-GAAG 553
* *** ** ** ** ** * ** **** * * * ** * * ***
consensus_3226#0 CAACCACCACC-TCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCA 763
consensus_3226#1 CGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCAC 613
* ** * ** ** ** * * ** * * ** * * *
consensus_3226#0 ATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCC 823
consensus_3226#1 GTCACGGTGGCGAGGACTATC---TGTTCGCGCTGCTCACCGGC---------------- 654
* * ** ** ** * * * *** * *
consensus_3226#0 GGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGG 883
consensus_3226#1 ------------------------------------------------------------
consensus_3226#0 GACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGG 943
consensus_3226#1 ------------------------------------------------------------
consensus_3226#0 CCAACAGTGCTCGAGGAATTCCGCGGG 970
consensus_3226#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||