cluster # 3227

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Anopheles gambiae
cluster # 3227 cluster # 3227 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3227#0 length = 961 sequences # 1

consensus_3227#1 length = 330 sequences # 2

consensusID : consensus_3227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 961
fasta sequence

                              [TTAGACAAGACAAGATGTAACAACAAGCAAGACAAGCGGCATACAGCAGCAAGATGGCAAAACTACTACGTCTGGCAGCTCTGGCAGTGGTGCTGGCGGCCCTGGTCGCAGCTAAACCGTCCCGACCGAAGATCGTCGGGGGTGAGGAAGCGATCGCGCACGAGTTCCCCTACCAGATCTCGCTGAGTGGAACTACAACAACGACGAGCAGGATCCATTCCACTTCTGTGGCGGTTCGCTGATCGCTGAAAAGTTCGTGCTGACTGCTGGCCACTGCGTACCGAGTGCGATTTCGCCCGATGGCTTCCCGGAGGCCGTTGCCGGCGAGCACGACTTCAGCCAGTACGATGCAGGAGTACAGCGTCGTCGCATCGCCGAGATGTACGTGCACGAGGACTACGAGGGTAGCGTTGGGCCCAACGATATTGCCATTTTCCGTGTCGACAAGCCGTTCCATCTGAATCGCAACATCCAGCTGGTCACGCTGCCGGAACCGAACGCTATCCCAACGGGCGAAACCACCATCAGCGGATGGGGATCGACATCCTTCTCCTTTGAGCCCTCCTATCCGAACATCCTCATGAAAACTACCCTCCCGATCATGGATTTGGAAGTGTGCCGTAAGATCTACTTCACGGAGACTGTTGCGGACAGCAACATCTGTGCCGGTACCATGGAAGGCACCTCGAGCGTCTGCTCGGGAGACTCCGGCGGCCCGCTGGTCCAGATCGACGACGAGATCGTGCAGGTTGGCATCGTGTCCTGGGGAGGTATTCCGTGCGGCGGTTACAAAAACCCGGGTGTTTTCGTTCGTGTTTCGTACTTTATTGACTGGATCAATGACAAAATCAACAATTGAATTACAATGGGCGCGTGATCGATGAACAATGTCCTACGCGAATTAAGGCTTCAAATGAAGTGCTACCCTAAAAAAAAAAAAAAATTAAAAAAAAAAGGGCCC]

[+] EMBL CNS092ZM             [TTAGACAAGACAAGATGTAACAACAAGCAAGACAAGCGGCATACAGCAGCAAGATGGCAAAACTACTACGTCTGGCAGCTCTGGCAGTGGTGCTGGCGGCCCTGGTCGCAGCTAAACCGTCCCGACCGAAGATCGTCGGGGGTGAGGAAGCGATCGCGCACGAGTTCCCCTACCAGATCTCGCTGAGTGGAACTACAACAACGACGAGCAGGATCCATTCCACTTCTGTGGCGGTTCGCTGATCGCTGAAAAGTTCGTGCTGACTGCTGGCCACTGCGTACCGAGTGCGATTTCGCCCGATGGCTTCCCGGAGGCCGTTGCCGGCGAGCACGACTTCAGCCAGTACGATGCAGGAGTACAGCGTCGTCGCATCGCCGAGATGTACGTGCACGAGGACTACGAGGGTAGCGTTGGGCCCAACGATATTGCCATTTTCCGTGTCGACAAGCCGTTCCATCTGAATCGCAACATCCAGCTGGTCACGCTGCCGGAACCGAACGCTATCCCAACGGGCGAAACCACCATCAGCGGATGGGGATCGACATCCTTCTCCTTTGAGCCCTCCTATCCGAACATCCTCATGAAAACTACCCTCCCGATCATGGATTTGGAAGTGTGCCGTAAGATCTACTTCACGGAGACTGTTGCGGACAGCAACATCTGTGCCGGTACCATGGAAGGCACCTCGAGCGTCTGCTCGGGAGACTCCGGCGGCCCGCTGGTCCAGATCGACGACGAGATCGTGCAGGTTGGCATCGTGTCCTGGGGAGGTATTCCGTGCGGCGGTTACAAAAACCCGGGTGTTTTCGTTCGTGTTTCGTACTTTATTGACTGGATCAATGACAAAATCAACAATTGAATTACAATGGGCGCGTGATCGATGAACAATGTCCTACGCGAATTAAGGCTTCAAATGAAGTGCTACCCTAAAAAAAAAAAAAAATTAAAAAAAAAAGGGCCC]




>consensus_3227#0
TTAGACAAGACAAGATGTAACAACAAGCAAGACAAGCGGCATACAGCAGCAAGATGGCAA
AACTACTACGTCTGGCAGCTCTGGCAGTGGTGCTGGCGGCCCTGGTCGCAGCTAAACCGT
CCCGACCGAAGATCGTCGGGGGTGAGGAAGCGATCGCGCACGAGTTCCCCTACCAGATCT
CGCTGAGTGGAACTACAACAACGACGAGCAGGATCCATTCCACTTCTGTGGCGGTTCGCT
GATCGCTGAAAAGTTCGTGCTGACTGCTGGCCACTGCGTACCGAGTGCGATTTCGCCCGA
TGGCTTCCCGGAGGCCGTTGCCGGCGAGCACGACTTCAGCCAGTACGATGCAGGAGTACA
GCGTCGTCGCATCGCCGAGATGTACGTGCACGAGGACTACGAGGGTAGCGTTGGGCCCAA
CGATATTGCCATTTTCCGTGTCGACAAGCCGTTCCATCTGAATCGCAACATCCAGCTGGT
CACGCTGCCGGAACCGAACGCTATCCCAACGGGCGAAACCACCATCAGCGGATGGGGATC
GACATCCTTCTCCTTTGAGCCCTCCTATCCGAACATCCTCATGAAAACTACCCTCCCGAT
CATGGATTTGGAAGTGTGCCGTAAGATCTACTTCACGGAGACTGTTGCGGACAGCAACAT
CTGTGCCGGTACCATGGAAGGCACCTCGAGCGTCTGCTCGGGAGACTCCGGCGGCCCGCT
GGTCCAGATCGACGACGAGATCGTGCAGGTTGGCATCGTGTCCTGGGGAGGTATTCCGTG
CGGCGGTTACAAAAACCCGGGTGTTTTCGTTCGTGTTTCGTACTTTATTGACTGGATCAA
TGACAAAATCAACAATTGAATTACAATGGGCGCGTGATCGATGAACAATGTCCTACGCGA
ATTAAGGCTTCAAATGAAGTGCTACCCTAAAAAAAAAAAAAAATTAAAAAAAAAAGGGCC
C

consensusID : consensus_3227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 330
fasta sequence

                              [CAGTTGTTTTTTTTACCGGCCTTATACAACGAACACGGGGAATTAGCGGAAAAATACCGATCGTTCACTTAGTTGCTGCTTACTTCTTCTTGGATACACCGACGGTACGACCGCGGCGACCGGTTATTTTTCGTGTTCTGACCACGGACACGCAGACCCCAGTTGTGGCGCATACCGCGATGAGCGTGAATTCGCTTCAGTCGCTCCAGATCTTCACGAAGCTTGGAGTTAATTTTCGACGAGGTCAGTTGCATGTTCTTTCCATCGACGATGTTCTTCTTTTTGTTGAGGAACCAGTTCGGGATTTTGTAGTTACGCGGGTTCGAGATG]

[+] EMBL CNS08T49             [CAGTTGTTTTTTTTACCGGCCTTATACAACGAACACGGGGAATTAGCGGAAAAATACCGATCGTTCACTTAGTTGCTGCTTACTTCTTCTTGGATACACCGACGGTACGACCGCGGCGACCGGT                                                                                                                                                                                                              ]
[+] EMBL CNS08L1G             [                                                             CGTTCACTTAGTTGCTGCTTACTTCTTCTTGGATACACCGACGGTACGACCGCGGCGACCGTGTATTTTTCGTGTTCTGACCACGGACACGCAGACCCCAGTTGTGGCGCATACCGCGATGAGCGTGAATTCGCTTCAGTCGCTCCAGATCTTCACGAAGCTTGGAGTTAATTTTCGACGAGGTCAGTTGCATGTTCTTTCCATCGACGATGTTCTTCTTTTTGTTGAGGAACCAGTTCGGGATTTTGTAGTTACGCGGGTTCGAGATG]




>consensus_3227#1
CAGTTGTTTTTTTTACCGGCCTTATACAACGAACACGGGGAATTAGCGGAAAAATACCGA
TCGTTCACTTAGTTGCTGCTTACTTCTTCTTGGATACACCGACGGTACGACCGCGGCGAC
CGGTTATTTTTCGTGTTCTGACCACGGACACGCAGACCCCAGTTGTGGCGCATACCGCGA
TGAGCGTGAATTCGCTTCAGTCGCTCCAGATCTTCACGAAGCTTGGAGTTAATTTTCGAC
GAGGTCAGTTGCATGTTCTTTCCATCGACGATGTTCTTCTTTTTGTTGAGGAACCAGTTC
GGGATTTTGTAGTTACGCGGGTTCGAGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3227#0      TTAGACAAGACAAGATGTAACAACAAGCAAGACAAGCGGCATACAGCAGCAAGATGGCAA 60
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      AACTACTACGTCTGGCAGCTCTGGCAGTGGTGCTGGCGGCCCTGGTCGCAGCTAAACCGT 120
consensus_3227#1      ---------------------------------CAGTTGTTTTTTTTACCGGCCTTATAC 27
                                                         *  *   *  *  * *         

consensus_3227#0      CCCGACCGAAGATCGTCGGGGGTGAGGAAGCGATCGCGCACGAGTTCCCCTACCAGATCT 180
consensus_3227#1      AACGAACACGGGGAATTAGCGGAAAAATACCGATCGTTCACTTAGTTGCTGCTTACTTCT 87
                        *** *   *    *  * **  *   * ******  ***    *  *     *  ***

consensus_3227#0      CGCTGAGTGGAACTACAACAACGACGAGCAGGATCCATTCCACTTCTGTGGCGGTTCGCT 240
consensus_3227#1      TCTTGGATACACCGACGGTA-CGACCGCGGCGACCGGTTATTTTTC-------GTGTTCT 139
                         **  *  * * **   * ****      ** *  **    ***       **   **

consensus_3227#0      GATCGCTGAAAAGTTCGTGCTGACTGCTGGCCACTGCGTACCGAGTGCGATTTCGCC-CG 299
consensus_3227#1      GACCACGGACACGCAGACCCCAGTTGTGGCGCATACCGCGATGAGCGTGAATTCGCTTCA 199
                      ** * * ** * *      *    **  *  **   **    *** * ** *****  * 

consensus_3227#0      ATGGCTTCCCGGAGGCCGTTGCCGGCGAGCACGACTTCAGCCAGTACGATGCAGGAGTAC 359
consensus_3227#1      GTCGCTCC----AGATCTTCAC--GAAGCTTGGAGTTAATTTTCGACGAGGTCAGT-TGC 252
                       * *** *    **  * *  *  *       ** ** *      **** *   *  * *

consensus_3227#0      AGCGTCGTCGCATCGCCGAGATGTACGTGCACGAGGACTACGAGGGTAGCGTTGGGCCCA 419
consensus_3227#1      ATGTTCTTTCCATCGACGATGTTCTTCTTTTTGT------TGAGGAACCAGTTCGG---- 302
                      *   ** *  ***** ***  *     *    *        ****     *** **    

consensus_3227#0      ACGATATTGCCATTTTCCGTGTCGACAAGCCGTTCCATCTGAATCGCAACATCCAGCTGG 479
consensus_3227#1      --GATTTTGTAGTTACGCGGGTT--CGAGATG---------------------------- 330
                        *** ***   **   ** **   * **  *                            

consensus_3227#0      TCACGCTGCCGGAACCGAACGCTATCCCAACGGGCGAAACCACCATCAGCGGATGGGGAT 539
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      CGACATCCTTCTCCTTTGAGCCCTCCTATCCGAACATCCTCATGAAAACTACCCTCCCGA 599
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      TCATGGATTTGGAAGTGTGCCGTAAGATCTACTTCACGGAGACTGTTGCGGACAGCAACA 659
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      TCTGTGCCGGTACCATGGAAGGCACCTCGAGCGTCTGCTCGGGAGACTCCGGCGGCCCGC 719
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      TGGTCCAGATCGACGACGAGATCGTGCAGGTTGGCATCGTGTCCTGGGGAGGTATTCCGT 779
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      GCGGCGGTTACAAAAACCCGGGTGTTTTCGTTCGTGTTTCGTACTTTATTGACTGGATCA 839
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      ATGACAAAATCAACAATTGAATTACAATGGGCGCGTGATCGATGAACAATGTCCTACGCG 899
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      AATTAAGGCTTCAAATGAAGTGCTACCCTAAAAAAAAAAAAAAATTAAAAAAAAAAGGGC 959
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      CC 961
consensus_3227#1      --