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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1243 fasta sequence
[CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACANAACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAGCAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGGCCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAANTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAAAACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAGCACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGCACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACACAGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAACAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCCCGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGAAAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATATACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNACCGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACGGTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGACCAACACANACCCCGGGGGCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAACNACCCGGGCCACCTCTCCAAGCGTAATTAANATNNGCACACGGGCGACACNNGCCGGGGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNACCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCANGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAGNAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC]
[+] EMBL AL694929 [CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACANAACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAGCAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGGCCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAANTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAAAACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAGCACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGCACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACACAGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAACAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCCCGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGAAAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATATACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNACCGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACGGTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGACCAACACANACCCCGGGGGCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAACNACCCGGGCCACCTCTCCAAGCGTAATTAANATNNGCACACGGGCGACACNNGCCGGGGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNACCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCANGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAGNAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC]
consensusID : consensus_3232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[GCAAGATCGNCACGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCATGAAGTGGATCGCGTATACAGCCAAAACCGACTACCAGCCCCGCACGCCCGGCTGCGCCCCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCACGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCATTGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCGCAAGAACGCTTCGCCGACACCGCATCCCGAACAATGGCGACGTTTCACCAGGGACGGTGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCGATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTACGTGCTCAGGTACCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGTACATGTGGGCTACTGTCCCTTGGGNCCGATGCCCGAAGCTGTCCGAGGGTGCCTNGTGGAACATGGGTGGCTAGN]
[+] EMBL BX468730 [GCAAGATCGNCACGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCATGAAGTGGATCGCGTATACAGCCAAAACCGACTACCAGCCCCGCACGCCCGGCTGCGCCCCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCACGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCATTGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCGCAAGAACGCTTCGCCGACACCGCATCCCGAACAATGGCGACGTTTCACCAGGGACGGTGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCGATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTACGTGCTCAGGTACCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGTACATGTGGGCTACTGTCCCTTGGGNCCGATGCCCGAAGCTGTCCGAGGGTGCCTNGTGGAACATGGGTGGCTAGN]
consensusID : consensus_3232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAAGTGTGACACAGTGGCAGGCCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTGCCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACATTATAAGACAATCTCGAAAGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA]
[+] EMBL BX619611 [TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAAGTGTGACACAGTGGCAGGCCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTGCCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACATTATAAGACAATCTCGAAAGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3232#0 CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACAN 60
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 AACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAG 120
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 CAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGG 180
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 CCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAA 240
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 NTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAA 300
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 AACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAG 360
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 CACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGC 420
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 ACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACAC 480
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------GCAAGATCGNCA 12
consensus_3232#0 AGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAA 540
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 CGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCA 72
consensus_3232#0 CAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCC 600
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 TGAAGTGGATCGCGTATACAGCCAAAACCGACT-ACCAGCCCCGCACGCCCGGCTGCGCC 131
consensus_3232#0 CGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGA 660
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 CCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCA 191
consensus_3232#0 AAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATAT 720
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 CGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCAT 251
consensus_3232#0 -ACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNAC 779
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 TGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCG 311
consensus_3232#0 CGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACG 839
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 CAAGAACGCTTCGCCGACACCGCATCCCGAACAATG---GCGACGTTTCACCAGGGACGG 368
consensus_3232#0 GTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGA 899
consensus_3232#2 -----------TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAA 49
consensus_3232#1 TGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCG 428
* * * * * *
consensus_3232#0 CCAACACANACCCCGGGG-GCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAA 958
consensus_3232#2 GTGTGACACAGTGGCAGG-CCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTG 108
consensus_3232#1 ATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTAC-GTGCTCAGGTA 487
* * * * * * *
consensus_3232#0 CNACCCGGGCCACCTCTCCAAGCGTAAT-TAANATNNGCACACGGGCGACACNNGCC-GG 1016
consensus_3232#2 CCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACAT-TATAAGACAATCTCG-AA 166
consensus_3232#1 CCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGT--ACATGTGGGCTACTGTCCCTTGG 545
* * ***** * * ** ** *
consensus_3232#0 GGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNA 1076
consensus_3232#2 AGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA------ 220
consensus_3232#1 GNCCGATGCCCGAAGCTGTCCGAGGGTGCCTN-GTGGAACATGGGTGGC-TAGN------ 597
* * * * * *
consensus_3232#0 CCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCA 1136
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 NGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAG 1196
consensus_3232#2 ------------------------------------------------------------
consensus_3232#1 ------------------------------------------------------------
consensus_3232#0 NAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC 1243
consensus_3232#2 -----------------------------------------------
consensus_3232#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||