cluster # 3247

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Anopheles gambiae
cluster # 3247 cluster # 3247 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3247#0 length = 908 sequences # 1

consensus_3247#1 length = 249 sequences # 1
consensus_3247#2 length = 247 sequences # 1

consensusID : consensus_3247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 908
fasta sequence

                              [GAGAAATTGTGAATTCCCATAGCTTCGCGCATCGAAAAACTGTCGCCTTTGTTTCGAACAAAAAGCTCCGAAGATGCTGTCCCGTTTGGCCTGTGGTAGACCCTTCGTCTCGTCGGCATTGATCAAATCGGCCCTGCAAACAGTTCCAAAGCGCCCGCAGCTCCAGCCAGTGTTCCGCCAGTACGCACGCGATGTGAAGGGAGGCAGCAGCCCGGGCAATGGCTCCACCCGGTCCGAATGCGTACGCGATCGGCAAGGGAGCGGTGGCGGGTGGTGCCGCCCTCGGCCTCGGTGCGCTGTGCTTCTACGGGCTTGGGTTGGGCAGTGGCACGAGCACGCTGGAAAATTCGCACCTGTGGCCCGAGTTCGTGAAGCAGCGCATACAGGACACGTACCTGTACTTTGGCGGTTCGCTCGCAATTTCGGCTGCTAGTGCCGTGGCCGTGTTTCGGTCGCCCCGTCTGCTGAGTCTCGTATCGAGAAATGGTTGGATGTCCGTTCTCGCCACATTCGCGCTCATGATCGGTTCCGGAATGGTGGCACAGTCCATTCCGTACAGTCCCGGCTTGGGCGCGAACAGCTCGCATGGGCGACCCATTCGGCCATCCTGGGTGCCGTGATCGCACCGATGTGCTTCGTTGGAGGGGCCATCCTGACACGCGCCGCCTGGTACACGGCCGGCATCGTCGGAGGCCTCTCCACCGTGGCCGTCTGTGCACCGAGCGACAAGTTCCTGTACATGGGCGGACCGCTAGCGATTGGCTTGGGGGTGGTATTCGCTTCGTCGCTAGCTTCGATGTGGCTTCCGCCGACGACCGCTCTCGGGGCCGGCATTGCCTCACTTTCGCTGTACGGTGGGCTGCTGCTTTTCAGCGGGTTCCTCCTGTACGACACGCAAAAGATTGTGA]

[+] EMBL CNS08Q1T             [GAGAAATTGTGAATTCCCATAGCTTCGCGCATCGAAAAACTGTCGCCTTTGTTTCGAACAAAAAGCTCCGAAGATGCTGTCCCGTTTGGCCTGTGGTAGACCCTTCGTCTCGTCGGCATTGATCAAATCGGCCCTGCAAACAGTTCCAAAGCGCCCGCAGCTCCAGCCAGTGTTCCGCCAGTACGCACGCGATGTGAAGGGAGGCAGCAGCCCGGGCAATGGCTCCACCCGGTCCGAATGCGTACGCGATCGGCAAGGGAGCGGTGGCGGGTGGTGCCGCCCTCGGCCTCGGTGCGCTGTGCTTCTACGGGCTTGGGTTGGGCAGTGGCACGAGCACGCTGGAAAATTCGCACCTGTGGCCCGAGTTCGTGAAGCAGCGCATACAGGACACGTACCTGTACTTTGGCGGTTCGCTCGCAATTTCGGCTGCTAGTGCCGTGGCCGTGTTTCGGTCGCCCCGTCTGCTGAGTCTCGTATCGAGAAATGGTTGGATGTCCGTTCTCGCCACATTCGCGCTCATGATCGGTTCCGGAATGGTGGCACAGTCCATTCCGTACAGTCCCGGCTTGGGCGCGAACAGCTCGCATGGGCGACCCATTCGGCCATCCTGGGTGCCGTGATCGCACCGATGTGCTTCGTTGGAGGGGCCATCCTGACACGCGCCGCCTGGTACACGGCCGGCATCGTCGGAGGCCTCTCCACCGTGGCCGTCTGTGCACCGAGCGACAAGTTCCTGTACATGGGCGGACCGCTAGCGATTGGCTTGGGGGTGGTATTCGCTTCGTCGCTAGCTTCGATGTGGCTTCCGCCGACGACCGCTCTCGGGGCCGGCATTGCCTCACTTTCGCTGTACGGTGGGCTGCTGCTTTTCAGCGGGTTCCTCCTGTACGACACGCAAAAGATTGTGA]




>consensus_3247#0
GAGAAATTGTGAATTCCCATAGCTTCGCGCATCGAAAAACTGTCGCCTTTGTTTCGAACA
AAAAGCTCCGAAGATGCTGTCCCGTTTGGCCTGTGGTAGACCCTTCGTCTCGTCGGCATT
GATCAAATCGGCCCTGCAAACAGTTCCAAAGCGCCCGCAGCTCCAGCCAGTGTTCCGCCA
GTACGCACGCGATGTGAAGGGAGGCAGCAGCCCGGGCAATGGCTCCACCCGGTCCGAATG
CGTACGCGATCGGCAAGGGAGCGGTGGCGGGTGGTGCCGCCCTCGGCCTCGGTGCGCTGT
GCTTCTACGGGCTTGGGTTGGGCAGTGGCACGAGCACGCTGGAAAATTCGCACCTGTGGC
CCGAGTTCGTGAAGCAGCGCATACAGGACACGTACCTGTACTTTGGCGGTTCGCTCGCAA
TTTCGGCTGCTAGTGCCGTGGCCGTGTTTCGGTCGCCCCGTCTGCTGAGTCTCGTATCGA
GAAATGGTTGGATGTCCGTTCTCGCCACATTCGCGCTCATGATCGGTTCCGGAATGGTGG
CACAGTCCATTCCGTACAGTCCCGGCTTGGGCGCGAACAGCTCGCATGGGCGACCCATTC
GGCCATCCTGGGTGCCGTGATCGCACCGATGTGCTTCGTTGGAGGGGCCATCCTGACACG
CGCCGCCTGGTACACGGCCGGCATCGTCGGAGGCCTCTCCACCGTGGCCGTCTGTGCACC
GAGCGACAAGTTCCTGTACATGGGCGGACCGCTAGCGATTGGCTTGGGGGTGGTATTCGC
TTCGTCGCTAGCTTCGATGTGGCTTCCGCCGACGACCGCTCTCGGGGCCGGCATTGCCTC
ACTTTCGCTGTACGGTGGGCTGCTGCTTTTCAGCGGGTTCCTCCTGTACGACACGCAAAA
GATTGTGA

consensusID : consensus_3247#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [CCGGTCAGCCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTCCTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGTGCGGACGTAAATCGTCTTTTGCTGCCGTGAAAAATGAGAGCTAAGTGGCGTAAGAAGCGTATGCGGAGGTTGAAGCGTAAGCGCAGGAAGATGCGTGCGAGATCCAAGTAAACCCCCGGCCGGTACCACCTCTCTACCGAAAGCTGTGC]

[+] EMBL BM581081             [CCGGTCAGCCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTCCTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGTGCGGACGTAAATCGTCTTTTGCTGCCGTGAAAAATGAGAGCTAAGTGGCGTAAGAAGCGTATGCGGAGGTTGAAGCGTAAGCGCAGGAAGATGCGTGCGAGATCCAAGTAAACCCCCGGCCGGTACCACCTCTCTACCGAAAGCTGTGC]




>consensus_3247#1
CCGGTCAGCCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTCCT
GCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGTGCGGACGTAAATCGTCTTTT
GCTGCCGTGAAAAATGAGAGCTAAGTGGCGTAAGAAGCGTATGCGGAGGTTGAAGCGTAA
GCGCAGGAAGATGCGTGCGAGATCCAAGTAAACCCCCGGCCGGTACCACCTCTCTACCGA
AAGCTGTGC

consensusID : consensus_3247#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [CGTCCGTAAAAATCCAATTCAGCACGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACATGGATGACAACCGACGCCAGGAGCAGACGTACGATTGACCCGCCGGCATGAACCCAGACGGCATCATCGAGTCGAACTATAGACGCGAGTCTTATGACAACTTCGACCAGATGGGTCTGCGTGAAGAGCTCCTCCGCGGCATTTACGCATACGACGTGTTTCGAGAAACCGTCTGCCATCCAGCAGC]

[+] EMBL BM614689             [CGTCCGTAAAAATCCAATTCAGCACGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACATGGATGACAACCGACGCCAGGAGCAGACGTACGATTGACCCGCCGGCATGAACCCAGACGGCATCATCGAGTCGAACTATAGACGCGAGTCTTATGACAACTTCGACCAGATGGGTCTGCGTGAAGAGCTCCTCCGCGGCATTTACGCATACGACGTGTTTCGAGAAACCGTCTGCCATCCAGCAGC]




>consensus_3247#2
CGTCCGTAAAAATCCAATTCAGCACGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACA
TGGATGACAACCGACGCCAGGAGCAGACGTACGATTGACCCGCCGGCATGAACCCAGACG
GCATCATCGAGTCGAACTATAGACGCGAGTCTTATGACAACTTCGACCAGATGGGTCTGC
GTGAAGAGCTCCTCCGCGGCATTTACGCATACGACGTGTTTCGAGAAACCGTCTGCCATC
CAGCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3247#0      GAGAAATTGTGAATTCCCATAGCTTCGCGCATCGAAAAACTGTCGCCTTTGTTTCGAACA 60
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      AAAAGCTCCGAAGATGCTGTCCCGTTTGGCCTGTGGTAGACCCTTCGTCTCGTCGGCATT 120
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      GATCAAATCGGCCCTGCAAACAGTTCCAAAGCGCCCGCAGCTCCAGCCAGTGTTCCGCCA 180
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      GTACGCACGCGATGTGAAGGGAGGCAGCAGCCCGGGCAATGGCTCCACCCGGTCCGAATG 240
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      CGTACGCGATCGGCAAGGGAGCGGTGGCGGGTGGTGCCGCCCTCGGCCTCGGTGCGCTGT 300
consensus_3247#1      ------------------------------------------------CCGGTCAGCCAC 12
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      GCTTCTACGGGCTTGGGTTGGGCAGTGGCACGAGCACGCTGGAAAATTCGCACCTGTGGC 360
consensus_3247#1      CTTACTTGGTGGCTGACTT---CAGGTAGGCGATCAGATCGCCA----CGCTCCTGCGGC 65
consensus_3247#2      CGTCCGTAAAAATCCAATT---CAGCACGTGTATCAAAGTGCCAA----ACTTCAATCGT 53
                        * *            **   ***       * **    *  *      *  *    * 

consensus_3247#0      CCGAGTTCGTGAAGCAGCGCATACAGGACACGTACCTGTACTTTGGCGGTTCGCTCGCAA 420
consensus_3247#1      T----TCTTCAGACCGGCGAACACCATCTTCGTGCCGGTGCGGACGTAAATCGTCTTTTG 121
consensus_3247#2      GAAAACATGGATGACAACCGACGCCAGGAGCAGAC--GTACGATTGACCCGCCGGCATGA 111
                                    *  *  *  *      *   *  ** *    *     *        

consensus_3247#0      TTTCGGCTGCTAGTGCCGTGGCCGTGTTTCGGT-CGCCCCGTCTGCTGAGTCTCGTATCG 479
consensus_3247#1      CTGCCGTGAAAAATG--AGAGCTAAGTGGCGTA-AGAAGCGTATGCGGAGGTTGAAGCGT 178
consensus_3247#2      ACCCAGACGGCATCATCGAGTCGAACTATAGACGCGAGTCTTATGACAACTTCGACCAGA 171
                         * *     *         *    *   *    *   * * **   *           

consensus_3247#0      AGAAATGGTTGGATGTCCGTTCTCGCCACATTCGCGCTCATGATCGGTTCCGGAATGGTG 539
consensus_3247#1      AAGCGCAGGAAGATG--CGTGCGAGATCCAAGTAAACCCCCGGCCGGTACCACCTCTCTA 236
consensus_3247#2      TGGGTCTGCGTGAAGAGCTCCTCCGCGGCATTTACGCATACGACGTGTTTCGAGAAACCG 231
                             *   ** *  *      *   **      *    *    **  *         

consensus_3247#0      GCACAGTCCATTCCGTACAGTCCCGGCTTGGGCGCGAACAGCTCGCATGGGCGACCCATT 599
consensus_3247#1      CCGAAAGCTGTGC----------------------------------------------- 249
consensus_3247#2      TCTGCCATCCAGCAGC-------------------------------------------- 247
                       *          *                                               

consensus_3247#0      CGGCCATCCTGGGTGCCGTGATCGCACCGATGTGCTTCGTTGGAGGGGCCATCCTGACAC 659
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      GCGCCGCCTGGTACACGGCCGGCATCGTCGGAGGCCTCTCCACCGTGGCCGTCTGTGCAC 719
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      CGAGCGACAAGTTCCTGTACATGGGCGGACCGCTAGCGATTGGCTTGGGGGTGGTATTCG 779
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      CTTCGTCGCTAGCTTCGATGTGGCTTCCGCCGACGACCGCTCTCGGGGCCGGCATTGCCT 839
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      CACTTTCGCTGTACGGTGGGCTGCTGCTTTTCAGCGGGTTCCTCCTGTACGACACGCAAA 899
consensus_3247#1      ------------------------------------------------------------
consensus_3247#2      ------------------------------------------------------------
                                                                                  

consensus_3247#0      AGATTGTGA 908
consensus_3247#1      ---------
consensus_3247#2      ---------