cluster # 3255

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Anopheles gambiae
cluster # 3255 cluster # 3255 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3255#0 length = 625 sequences # 2

consensus_3255#1 length = 334 sequences # 1

consensusID : consensus_3255#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 625
fasta sequence

                              [CCGCCCACGCGTCCGCGGCTGCAAAC-GCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAGGGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGGTACGTGTTTCTGGTGTACAAACAGAACGGCAAGCTGACGTTCGATGAGCCGCGGCTGACCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACCAGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGCTGCTGTACAAGCAGCTGGGTGCATAAA]

[+] EMBL BM577753             [CCGCCCACGCGTCCGCGGCTGCAAAC GCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAGGGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGGTACGTGTTTCTGGTGTACAAACAGAACGGCAAGCTGACGTTCGATGAGCCGCGGCTGACCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACCAGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGCTGCTGTACAAGCAGCTGGGTGCATAAA]
[+] EMBL BM576300             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAGGGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGGTACGTGTTTCTGGTGTACAAACAGAACGGCAAGCTGACGTTCGATGAGCCGCGGCTGACCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACCAGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGCTGCTGTACAAGCAGCTGGGTGCA    ]




>consensus_3255#0
CCGCCCACGCGTCCGCGGCTGCAAACGCGTGCATCGTCCATTTTTACCACCTCGATCCGG
CTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTG
CCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAG
GGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGAC
AGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCG
ACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAG
GGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGG
TACGTGTTTCTGGTGTACAAACAGAACGGCAAGCTGACGTTCGATGAGCCGCGGCTGACC
AACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACCAG
CTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGCTG
CTGTACAAGCAGCTGGGTGCATAAA

consensusID : consensus_3255#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [GCTAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAACTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGATCCCGGTGCGAAGCGGCTGTTCCACATAAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTGTCGGCCATGAACAAGGGCGACTGCTTCATACTGGACGCGGGTCGTGAAATCTACGTGTACGTCGGCCCGCATGCGGGTCGCGTCGAGAAGCTGAAGGCGATCAACTTTGCGAACGA]

[+] EMBL AGA285380            [GCTAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAACTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGATCCCGGTGCGAAGCGGCTGTTCCACATAAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTGTCGGCCATGAACAAGGGCGACTGCTTCATACTGGACGCGGGTCGTGAAATCTACGTGTACGTCGGCCCGCATGCGGGTCGCGTCGAGAAGCTGAAGGCGATCAACTTTGCGAACGA]




>consensus_3255#1
GCTAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTC
CACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAACTGAACATTCCCGCATTCAACAAT
GCGGGAAAAACGGTCGGCGTTGAGATCCCGGTGCGAAGCGGCTGTTCCACATAAAGGGTA
CGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTGTCGGCCATGAACAAGGGCGACT
GCTTCATACTGGACGCGGGTCGTGAAATCTACGTGTACGTCGGCCCGCATGCGGGTCGCG
TCGAGAAGCTGAAGGCGATCAACTTTGCGAACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3255#0      CCGCCCACGCGTCCGCGGCTGCAAACGCGTGCATCGTCCATTTTTACCACCTCGATCCGG 60
consensus_3255#1      ------------------------------------------------------------
                                                                                  

consensus_3255#0      CTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTG 120
consensus_3255#1      ------------------------------------------------------------
                                                                                  

consensus_3255#0      CCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAG 180
consensus_3255#1      ------------------------------------------------------------
                                                                                  

consensus_3255#0      GGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGAC 240
consensus_3255#1      -----------------------------------------GCTAGAATGAATCGTTTGC 19
                                                               * * ***** * **    *

consensus_3255#0      AGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCG 300
consensus_3255#1      -------TCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCAC--GGTGCTA 70
                              * *     * ** *   **** * * *** *** *    ** *  **  *  

consensus_3255#0      ACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAG 360
consensus_3255#1      CCGT--TGCGAGCGGGCCGAACAAGAAACTG--AACATTCCCGCATTCAACAATGC---G 123
                       ***   ***** **  * *          *  **********    * *    **   *

consensus_3255#0      GGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGG 420
consensus_3255#1      GGAAAAACG--GTCGGCGT---TGAGATC-------CCGGTGCGAAGCGGC--------- 162
                      **  *****  ********   ** * **       ***  * *** ****         

consensus_3255#0      TACGTGTTTCTGGTGTACAAACAGAACGGCAAGC--TGACGTTCGATGAGCCGCGGCTGA 478
consensus_3255#1      ----TGTTCC----ACATAAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCG-AGCTGG 213
                          **** *      * ***  * ***   *    *  *** **    * **  **** 

consensus_3255#0      CCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACC 538
consensus_3255#1      CCGTGTCGGCCATGAACAAGGGCGACTGCTTCATACTGGACGCGGGTCGTGAAATCTACG 273
                      **    **  *  * ****  * * * * ***    *   *  *  *   ** *  *** 

consensus_3255#0      AGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGC 598
consensus_3255#1      TGTACGTCGGCCCGCATGCGGGTCGCGTCGAGAAGCTGAAGGCGATCAACTTTGCGA-AC 332
                       *   * *   ***   *****   * ** *  **    **  *  * * * ** *   *

consensus_3255#0      TGCTGTACAAGCAGCTGGGTGCATAAA 625
consensus_3255#1      GA------------------------- 334