These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGAGGGTGCGTCAAGATCTACGATATGGCGCCCGCAATGCGCGGTGTCGGTGTGGGTCAATCGGTCGCAATGGTCGTGGCAATGTCGTACTACACACCGATCCTGGCGATCACTCTGCGCTATCTGTTGCTCTCGTTTAGCAGTGAGCTGCCGTGGAGCAAGTGCGATCATTCGTGGAGTCGGTGTATCAATTCGGACTTTCTTGGATATGCGAACGTTACGAATGGACTGGCCGAGGATCGCCGGAACGTTTCCGCTGAGCTGTACTTTACCAACACCATAATGCACCGAGCACCATTGGCAGAGGGACTTGGATGGCCAGATGGCAAGCTGGTCCTGTGTCTACTCGTCTCCTGGTCCATTCTGGTTGTGATCCTCATCAAAGGAGTTCGCAGCACCGGGAAAGCGGCCTACTTTCTTGCCATCTTCCCGTATGTAATCATTTTCATCCTGCTTGCCCACTCCCTCAGTCTGGAAGGTTCGCTCGAGGGTATCAAGTTCTTCCTAACCCCCAAATGGGAAAGCCTATTCTCAGCCAAGGTATGGATGGAAGCAGTCACACAGTGTTTCTTCTCCCTGTCAATCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCAT] [+] EMBL BM653918 [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGAGGGTGCGTCAAGATCTACGATATGGCGCCCGCAATGCGCGGTGTCGGTGTGGGTCAATCGGTCGCAATGGTCGTGGCAATGTCGTACTACACACCGATCCTGGCGATCACTCTGCGCTATCTGTTGCTCTCGTTTAGCAGTGAGCTGCCGTGGAGCAAGTGCGATCATTCGTGGAGTCGGTGTATCAATTCGGACTTTCTTGGATATGCGAACGTTACGAATGGACTGGCCGAGGATCGCCGGAACGTTTCCGCTGAGCTGTACTTTACCAACACCATAATGCACCGAGCACCATTGGCAGAGGGACTTGGATGGCCAGATGGCAAGCTGGTCCTGTGTCTACTCGTCTCCTGGTCCATTCTGGTTGTGATCCTCATCAAAGGAGTTCGCAGCACCGGGAAAGCGGCCTACTTTCTTGCCATCTTCCCGTATGTAATCATTTTCATCCTGCTTGCCCACTCCCTCAGTCTGGAAGGTTCGCTCGAGGGTATCAAGTTCTTCCTAACCCCCAAATGGGAAAGCCTATTCTCAGCCAAGGTATGGATGGAAGCAGTCACACAGTGTTTCTTCTCCCTGTCAATCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCAT] consensusID : consensus_3256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 681 fasta sequence [CCGCCCACGCGTCCGCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCATCTCATGGCTGGATACGTTCACATCCATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACTTGGCACACGTCACGCACTGCACCAGCATCCAGGATATTGTGCGCGAGGGCCCCGGACTAACGTTCATGGCGTATCCGGACGCGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTATTCTTCCTCATGTTCTTCATCGTAGGCATTGGCAGTAATCTGGGAGCGATCACGAGTGTCATCACGGCTATTCGCGACCGATGCCCAACGGTTGAGAATTGGAAGATTGTAATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGTTAGATCTTCTGGACGTGCTGGATACATACGGAGCAAAATACGTTACGCTCACGCTAGCCCTGTTTGAGATTCTCACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACATCAAGTTTATGCTGCAGATCGAAACAGGACTGTTTTGGCGCATCTGCTGGGGCATTATTGCGCCGATGCTGGTCGGTGTAATACTGATCGTGAGTTTTGTCGACTACATCCCATT] [+] EMBL BM639251 [CCGCCCACGCGTCCGCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCATCTCATGGCTGGATACGTTCACATCCATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACTTGGCACACGTCACGCACTGCACCAGCATCCAGGATATTGTGCGCGAGGGCCCCGGACTAACGTTCATGGCGTATCCGGACGCGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTATTCTTCCTCATGTTCTTCATCGTAGGCATTGGCAGTAATCTGGGAGCGATCACGAGTGTCATCACGGCTATTCGCGACCGATGCCCAACGGTTGAGAATTGGAAGATTGTAATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGTTAGATCTTCTGGACGTGCTGGATACATACGGAGCAAAATACGTTACGCTCACGCTAGCCCTGTTTGAGATTCTCACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACATCAAGTTTATGCTGCAGATCGAAACAGGACTGTTTTG ] [+] EMBL BM626922 [ ccgcggacgCGTGGGGCAATGATCATCTCATGGCTGGATACGTTCACATCCATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACTTGGCACACGTCACGCACCGCACCAGCATCCAGGATATTGTGCGCGAGGGCCCCGGACTAACGTTCATGGCGTATCCGGACGCGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTATTCTTCCTGATGTTCTTCATCGTAGGCATTGGCAGTAATCTGGGAGCGATCACGAGTGTCATCACGGCTATTCGCGACCGATGCCCAACGGTTGAGAATTGGAAGATTGTGATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGTTAGATCTTCTGGACGTACTGGATACATACGGAGCAAAGTACGTTACGCTCACGCTAGCCCTGTTTGAGATTCTTACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACATCAAGTTTATGCTGCAGATCGAAACAGGGCTGTTTTGGCGCATCTGCTGGGGCATTATTGCGCCGATGCTGGTCGGTGTAATACTGATCGTGAGTTTTGTCGACTACATCCCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3256#0 CCGCGGACGCGTGGGCGGACGCG-TGGGGCCGAGG-GTGCGTCAAGATCTACGATATGGC 58 consensus_3256#1 CCGCCCACGCGTCCGCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTT--C 58 **** ****** ** * * *** * * ** * * * ** * ** * * consensus_3256#0 GCCCGCAATGCGCGGTGTCG-GTGTGGGTCAATCGGTCGCAATGGTCGTGGCAATGTCGT 117 consensus_3256#1 TCCAATAATGTCTATCGTGATGCAATGATCATCTCATGGC--TGGATACGTTCACATC-C 115 ** **** ** * * *** * ** *** * * ** consensus_3256#0 ACTACACACCGATCC-TGGCGATC--ACTCTGCGCTATCTGTTGCTCTCGTTTAGCAGTG 174 consensus_3256#1 ATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACT-TGGCACACGTCACGCACTG 174 * * * *** * * * * ** * * ** ** ** * ** * *** *** ** consensus_3256#0 AGCTGCCGTGGAGCAAGTGCGATCATTCGTGGAGTCGGTGTATCAATTCGGACTTTCTTG 234 consensus_3256#1 CACCAGCATCCAG-----GATATTGTGCGCGAGGGCCCCGGACTAACG-----TTCATGG 224 * * * ** * ** * ** * * * * * ** ** * * consensus_3256#0 GATATGCGAACGTTACGAATGGACTGGCCGAGGATCGCCGGAACGTTTCCGCTGAGCTGT 294 consensus_3256#1 CGTATCCGGACG---CGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTAT 281 *** ** *** *** * * * *** * * * * * * * * * * ** * consensus_3256#0 ACTTTACCAACACCATAATGCACCGAGCACCATTGGCAGAGGGACTTGGATGGCCAGATG 354 consensus_3256#1 TCTTCCTCA----TGTTCTTCATCGTA-GGCATTGGCAGTA--ATCTGGGAG---CGATC 331 *** ** * * ** ** ********* * *** * *** consensus_3256#0 GCAAGCTGGTCCTGTGTCTACTCGTCTCCTGGTCCATTCTGGTTGTGATCCTCATCAAAG 414 consensus_3256#1 ACGAG-TGTCATCACGGCTATTCG-CGACCGATGCCCAACGGTTGAGAATTGGAAGATTG 389 * ** ** * *** *** * * * * * ***** ** * * * consensus_3256#0 GAGTTCGCAGCACCGGGAAAGCGGCCTACTTTCTTGCCATCTTCCC-GTATGTAATCATT 473 consensus_3256#1 TAATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGT 449 * * ** * * ** * * * ** * *** ** * * * consensus_3256#0 TTCATCCTGCTTGCCCACTCCCTCAGTCTGGAAGGTTCGCTCGAGGGTATCAAGTTCTTC 533 consensus_3256#1 TAGATCTTCTGGACGTGCTGGATACATACGGAGCAAA-ATACGTTACGCTCACGCTAGCC 508 * *** * * ** * * *** ** *** * * * consensus_3256#0 CTAACCCCCAAATGGGAAAGCCTATTCTCAGCCAAGGTATGGATGGAAGCAGTC---ACA 590 consensus_3256#1 CTG--TTTGAGATTCTCACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACA 566 ** * ** * * * * ** ***** * *** *** consensus_3256#0 CAGTGTTTCTTCTCCCTGTCAAT------CTGTTTTGGTGGAATCATTGCGTACTCCTCG 644 consensus_3256#1 TCAAGTTTATGCTGCAGATCGAAACAGGACTGTTTTGGCGCATCTGCTGGGGCATTATTG 626 **** * ** * ** * ********* * * ** * * * * consensus_3256#0 T-TCAATAATTTCTCCAATAATGTCTATCGTGA--TGCAATGATCAT-------- 688 consensus_3256#1 CGCCGATGCTGGTCGGTGTAATACTGATCGTGAGTTTTGTCGACTACATCCCATT 681 * ** * **** ******* * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||