cluster # 326

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Anopheles gambiae
cluster # 326 cluster # 326 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_326#0 length = 685 sequences # 1

consensus_326#1 length = 483 sequences # 1

consensusID : consensus_326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCGCGTTCGGTTTGCGCAAACCTATCCTCTCTCTCTACTCCCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCCATCCGAGTCAATCGTTAGTCAATGTCATTTCGGTGCCCTAAAGTTGACCGTATGCGGGTCAATCTTTTGAAGATAATTGTACAGTAAAAGCATTAAGTGACGGTTAATGTTTTATTTCGTTTTGTCGTGTTTTTGTTGTGTCTGCATTTCGTTACGTACATCCTTCATCTCTGGCAGCAGCCTTCG]

[+] EMBL BM640073             [CCGCGCGTTCGGTTTGCGCAAACCTATCCTCTCTCTCTACTCCCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCCATCCGAGTCAATCGTTAGTCAATGTCATTTCGGTGCCCTAAAGTTGACCGTATGCGGGTCAATCTTTTGAAGATAATTGTACAGTAAAAGCATTAAGTGACGGTTAATGTTTTATTTCGTTTTGTCGTGTTTTTGTTGTGTCTGCATTTCGTTACGTACATCCTTCATCTCTGGCAGCAGCCTTCG]




>consensus_326#0
CCGCGCGTTCGGTTTGCGCAAACCTATCCTCTCTCTCTACTCCCGCGAAGGCTCCGCGTG
ACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAAT
GGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACAC
CAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAA
TTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTT
GGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCG
TGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAAT
TAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCT
TCTATCCTAGACTAATTCCATCCGAGTCAATCGTTAGTCAATGTCATTTCGGTGCCCTAA
AGTTGACCGTATGCGGGTCAATCTTTTGAAGATAATTGTACAGTAAAAGCATTAAGTGAC
GGTTAATGTTTTATTTCGTTTTGTCGTGTTTTTGTTGTGTCTGCATTTCGTTACGTACAT
CCTTCATCTCTGGCAGCAGCCTTCG

consensusID : consensus_326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCC]

[+] EMBL BM625796             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCC]




>consensus_326#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGC
TAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTC
GTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGT
CAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAA
GTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTT
GTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGC
CTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGC
GATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAAT
TCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_326#0      CCGCGCGTTCGGTTTGCGCAAACCTATCCTCTCTCTCTACTCCCGCGAAGGCTCCGCGTG 60
consensus_326#1      ---------------CCGCGGACGCGTGGGCGGACGC-GTGGGCGCGAAGGCTCCGCGTG 44
                                     ***  **   *   *   * *      *****************

consensus_326#0      ACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAAT 120
consensus_326#1      ACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAAT 104
                     ************************************************************

consensus_326#0      GGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACAC 180
consensus_326#1      GGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACAC 164
                     ************************************************************

consensus_326#0      CAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAA 240
consensus_326#1      CAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAA 224
                     ************************************************************

consensus_326#0      TTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTT 300
consensus_326#1      TTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTT 284
                     ************************************************************

consensus_326#0      GGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCG 360
consensus_326#1      GGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCG 344
                     ************************************************************

consensus_326#0      TGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAAT 420
consensus_326#1      TGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAAT 404
                     ************************************************************

consensus_326#0      TAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCT 480
consensus_326#1      TAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCT 464
                     ************************************************************

consensus_326#0      TCTATCCTAGACTAATTCCATCCGAGTCAATCGTTAGTCAATGTCATTTCGGTGCCCTAA 540
consensus_326#1      TCTATCCTAGACTAATTCC----------------------------------------- 483
                     *******************                                         

consensus_326#0      AGTTGACCGTATGCGGGTCAATCTTTTGAAGATAATTGTACAGTAAAAGCATTAAGTGAC 600
consensus_326#1      ------------------------------------------------------------
                                                                                 

consensus_326#0      GGTTAATGTTTTATTTCGTTTTGTCGTGTTTTTGTTGTGTCTGCATTTCGTTACGTACAT 660
consensus_326#1      ------------------------------------------------------------
                                                                                 

consensus_326#0      CCTTCATCTCTGGCAGCAGCCTTCG 685
consensus_326#1      -------------------------