cluster # 3273

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Anopheles gambiae
cluster # 3273 cluster # 3273 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3273#0 length = 606 sequences # 2

consensus_3273#1 length = 492 sequences # 1

consensusID : consensus_3273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 606
fasta sequence

                              [CCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACAAAACACCCACAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTTAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAGAGAGGGGTTGAGAGAGAGAGAGAGGAAAAGAAGTAAAAAAAGCCTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGCGCAAAATCTATTGCAGTTTTATTCATATATATAGACCATGTAACGAGCATGTAACGGTTTTGCGAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGTAGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGTCAGTTCAGTCAGTCAGCCAGCCATGGG]

[+] EMBL BM626421             [CCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACAAAACACCCACAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTTAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAGAGAGGGGTTGAGAGAGAGAGAGAGGAAAAGAAGTAAAAAAAGCCTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGCGCAAAATCTATTGCAGTTTTATTCATATATATAGACCATGTAACGAGCATGTAACGGTTTTGCGAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGTAGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGT                           ]
[+] EMBL BX617215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TAACGGTTTTGCGAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGTAGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGTCAGTTCAGTCAGTCAGCCAGCCATGGG]




>consensus_3273#0
CCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACAAACACACACACACACACACACACACACACACACAAACACACACACACACACACACAC
ACACACAAAACACCCACAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTTAA
CAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAG
AGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAGAGAGG
GGTTGAGAGAGAGAGAGAGGAAAAGAAGTAAAAAAAGCCTAGCGACAACGGTTGGTCGCT
ATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGCG
CAAAATCTATTGCAGTTTTATTCATATATATAGACCATGTAACGAGCATGTAACGGTTTT
GCGAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTC
GTAGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGTCAGTTCAGTCAGTCAGCCAGC
CATGGG

consensusID : consensus_3273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [GATCTGCAAAGGCATCGGTAAGAGCATGAACACTCCGCATCTAATCAAGAACACAATGGCAATAGACTCTCAAAAGACAAAAACGTGCTTCAAGCCTATGCTACTTTCCAATGGCAACAAACAATGAATGGAAAGCCACAACTATAATGGTGACAAAGATGCAGGATGAAACAAATACCACACACACACACAGACACACACACACACACACATAGACACACACACACACACACACACACACACACAAACACCCTCAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTAAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGTAAAAAAAGCTTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGC]

[+] EMBL BX616587             [GATCTGCAAAGGCATCGGTAAGAGCATGAACACTCCGCATCTAATCAAGAACACAATGGCAATAGACTCTCAAAAGACAAAAACGTGCTTCAAGCCTATGCTACTTTCCAATGGCAACAAACAATGAATGGAAAGCCACAACTATAATGGTGACAAAGATGCAGGATGAAACAAATACCACACACACACACAGACACACACACACACACACATAGACACACACACACACACACACACACACACACAAACACCCTCAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTAAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGTAAAAAAAGCTTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGC]




>consensus_3273#1
GATCTGCAAAGGCATCGGTAAGAGCATGAACACTCCGCATCTAATCAAGAACACAATGGC
AATAGACTCTCAAAAGACAAAAACGTGCTTCAAGCCTATGCTACTTTCCAATGGCAACAA
ACAATGAATGGAAAGCCACAACTATAATGGTGACAAAGATGCAGGATGAAACAAATACCA
CACACACACACAGACACACACACACACACACATAGACACACACACACACACACACACACA
CACACAAACACCCTCAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTAAACA
AAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGAGAGGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGTAAAAAAAGCTTAGCGACA
ACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCA
TTAGCTCTGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3273#0      ------------------------------------------------------------
consensus_3273#1      GATCTGCAAAGGCATCGGTAAGAGCATGAACACTCCGCATCTAATCAAGAACACAATGGC 60
                                                                                  

consensus_3273#0      ------------------------------------------------------CCGCGC 6
consensus_3273#1      AATAGACTCTCAAAAGACAAAAACGTGCTTCAAGCCTATGCTACTTTCCAATGGCAACAA 120
                                                                            *  *  

consensus_3273#0      ACA-CACACACACACACACACACACACACAC-ACACACACACACACACACACACACACAA 64
consensus_3273#1      ACAATGAATGGAAAGCCACAACTATAATGGTGACAAAGATGCAGGATGAAACAAATACCA 180
                      ***    *   * *  ****   * *      *** * *  **     * *** * ** *

consensus_3273#0      -ACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACA 123
consensus_3273#1      CACACACACACAGACACACACACACACACACATAGACACACACACACACACACACACACA 240
                       *********** ******************* * *************************

consensus_3273#0      CACA-AAACACCCACAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTTAACA 182
consensus_3273#1      CACACAAACACCCTCAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTAAACA 300
                      **** ******** ***************************************** ****

consensus_3273#0      AAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAG 242
consensus_3273#1      AAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGAGAGGAGAGAG 360
                      ************************************************* **********

consensus_3273#0      AGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAGAGAGGGG 302
consensus_3273#1      AGAGAGAGAGAGAGAGA------------------------------------------- 377
                      ***** ***** *****                                           

consensus_3273#0      TTGAGAGAGAGAGAGAGGAAAAGAAGTAAAAAAAGCCTAGCGACAACGGTTGGTCGCTAT 362
consensus_3273#1      --GAGAGAGAGAGAGAGGAGAAGAAGTAAAAAAAGCTTAGCGACAACGGTTGGTCGCTAT 435
                        ***************** **************** ***********************

consensus_3273#0      AGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGCGCA 422
consensus_3273#1      AGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGC--- 492
                      *********************************************************   

consensus_3273#0      AAATCTATTGCAGTTTTATTCATATATATAGACCATGTAACGAGCATGTAACGGTTTTGC 482
consensus_3273#1      ------------------------------------------------------------
                                                                                  

consensus_3273#0      GAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGT 542
consensus_3273#1      ------------------------------------------------------------
                                                                                  

consensus_3273#0      AGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGTCAGTTCAGTCAGTCAGCCAGCCA 602
consensus_3273#1      ------------------------------------------------------------
                                                                                  

consensus_3273#0      TGGG 606
consensus_3273#1      ----