cluster # 3290

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Anopheles gambiae
cluster # 3290 cluster # 3290 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3290#0 length = 899 sequences # 2

consensus_3290#1 length = 252 sequences # 1

consensusID : consensus_3290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 899
fasta sequence

                              [CCGTTTTAAATAAATATATGTAATTCCAAGCAAAAACAAATAAATGCTGCCACTGCGCGAGAATAGGGGGAAGGTACGCGATTCACGATTACACAACATTCATACAATCTGTTTTACACCGTATCAGTGAGCCACACGGATCATCCAGGCGGAGGTAGGAGTAAAGTGGGTGGTTTTTGCTACACGCGAGACGTTGCTTGTGCGGTTTCTTGTCGTGTAAGGAATAGCTTAATTGTTCATTTGTGGACTCCCCTCCCCCCACGTCTCTGTGGGAGCGAGAGAGAGAGAGAGAGGGGATTCCAATCGGGAGGACAAACTATTACCTGCTTAACAGTTGCCTCGTTTGGTACCACCGACCCCTCCACCCCCCCCCCCCCCAACTCTTTCGCAATCCAATAATCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAACGATGCTGCGAATTTCGGTACCGGAAATATTTAATTTAAAAGACCCGCCGAGGAGGGAAATCACAGGTCAGGCAGTAGGCGTGCGTAGGAAAAATAAGAAGAAAATCACACTACACACAAACAGGTGAAACAAAGGGAAGAATAAAAAAGACACACACACACACACACACCCACACATACAATCATTTATTGGTAAAACGAACGAACTGCGCAATAGTGTAAAATAACAATCATAATAGTGGTTTCGTTAATGACGTCAGATAAGATTGAATATTAATATAAAGGATAGCAAAAAAAACGAGTAAAGACAGAAAAGAGAGAGAGAGAGAGAGAGACACACACGGCACAGATTTGGACCTATAC]

[+] EMBL BM625303             [CCGTTTTAAATAAATATATGTAATTCCAAGCAAAAACAAATAAATGCTGCCACTGCGCGAGAATAGGGGGAAGGTACGCGATTCACGATTACACAACATTCATACAATCTGTTTTACACCGTATCAGTGAGCCACACGGATCATCCAGGCGGAGGTAGGAGTAAAGTGGGTGGTTTTTGCTACACGCGAGACGTTGCTTGTGCGGTTTCTTGTCGTGTAAGGAATAGCTTAATTGTTCATTTGTGGACTCCCCTCCCCCCACGTCTCTGTGGGAGCGAGAGAGAGAGAGAGAGGGGATTCCAATCGGGAGGACAAACTATTACCTGCTTAACAGTTGCCTCGTTTGGTACCACCGACCCCTCCACCCCCCCCCCCCCCAACTCTTTCGCAATCCAATAATCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAACGATGCTGCGAATTTCGG                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX609566             [                                                                                                                                                                                                                                                                                                                                                                                                          AATAATCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAACGATGCTGCGAATTTCGGTACCGGAAATATTTAATTTAAAAGACCCGCCGAGGAGGGAAATCACAGGTCAGGCAGTAGGCGTGCGTAGGAAAAATAAGAAGAAAATCACACTACACACAAACAGGTGAAACAAAGGGAAGAATAAAAAAGACACACACACACACACACACCCACACATACAATCATTTATTGGTAAAACGAACGAACTGCGCAATAGTGTAAAATAACAATCATAATAGTGGTTTCGTTAATGACGTCAGATAAGATTGAATATTAATATAAAGGATAGCAAAAAAAACGAGTAAAGACAGAAAAGAGAGAGAGAGAGAGAGAGACACACACGGCACAGATTTGGACCTATAC]




>consensus_3290#0
CCGTTTTAAATAAATATATGTAATTCCAAGCAAAAACAAATAAATGCTGCCACTGCGCGA
GAATAGGGGGAAGGTACGCGATTCACGATTACACAACATTCATACAATCTGTTTTACACC
GTATCAGTGAGCCACACGGATCATCCAGGCGGAGGTAGGAGTAAAGTGGGTGGTTTTTGC
TACACGCGAGACGTTGCTTGTGCGGTTTCTTGTCGTGTAAGGAATAGCTTAATTGTTCAT
TTGTGGACTCCCCTCCCCCCACGTCTCTGTGGGAGCGAGAGAGAGAGAGAGAGGGGATTC
CAATCGGGAGGACAAACTATTACCTGCTTAACAGTTGCCTCGTTTGGTACCACCGACCCC
TCCACCCCCCCCCCCCCCAACTCTTTCGCAATCCAATAATCGTAGCGTACGCGCAACACA
TATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAA
AGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAACGAT
GCTGCGAATTTCGGTACCGGAAATATTTAATTTAAAAGACCCGCCGAGGAGGGAAATCAC
AGGTCAGGCAGTAGGCGTGCGTAGGAAAAATAAGAAGAAAATCACACTACACACAAACAG
GTGAAACAAAGGGAAGAATAAAAAAGACACACACACACACACACACCCACACATACAATC
ATTTATTGGTAAAACGAACGAACTGCGCAATAGTGTAAAATAACAATCATAATAGTGGTT
TCGTTAATGACGTCAGATAAGATTGAATATTAATATAAAGGATAGCAAAAAAAACGAGTA
AAGACAGAAAAGAGAGAGAGAGAGAGAGAGACACACACGGCACAGATTTGGACCTATAC

consensusID : consensus_3290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [ATTTCCCAATTCCGGGACGCGACCAAACCGTATTTACCCTGGCTTTACACCACGNTTGCTCGTTTTGGTACCCACCCGGACCCCCTCCATTCCCCCCCCCCCCACCCAACTCTTTTCGCAATTCCAATAATTCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAAAAAAAAAAAAAACCTCTCGTGCCGNNTTCGTTGCCTCG]

[-] EMBL BX468281             [ATTTCCCAATTCCGGGACGCGACCAAACCGTATTTACCCTGGCTTTACACCACGNTTGCTCGTTTTGGTACCCACCCGGACCCCCTCCATTCCCCCCCCCCCCACCCAACTCTTTTCGCAATTCCAATAATTCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAAAAAAAAAAAAAACCTCTCGTGCCGNNTTCGTTGCCTCG]




>consensus_3290#1
ATTTCCCAATTCCGGGACGCGACCAAACCGTATTTACCCTGGCTTTACACCACGNTTGCT
CGTTTTGGTACCCACCCGGACCCCCTCCATTCCCCCCCCCCCCACCCAACTCTTTTCGCA
ATTCCAATAATTCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATT
GGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAAAAAAAAAAAAAACCTCTCGTGCCGNN
TTCGTTGCCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3290#0      CCGTTTTAAATAAATATATGTAATTCCAAGCAAAAACAAATAAATGCTGCCACTGCGCGA 60
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      GAATAGGGGGAAGGTACGCGATTCACGATTACACAACATTCATACAATCTGTTTTACACC 120
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      GTATCAGTGAGCCACACGGATCATCCAGGCGGAGGTAGGAGTAAAGTGGGTGGTTTTTGC 180
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      TACACGCGAGACGTTGCTTGTGCGGTTTCTTGTCGTGTAAGGAATAGCTTAATTGTTCAT 240
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      TTGTGGACTCCCCTCCCCCCACGTCTCTGTGGGAGCGAGAGAGAGAGAGAGAGGGGATTC 300
consensus_3290#1      -------------------------ATTTCCCAATTCCGGGACGCGACCAAACCGTATTT 35
                                                 *     *    * **       * *  * *** 

consensus_3290#0      CAATCGGGAGGACAA-ACTATTACCTGCTTAACAGTTGCCTCGTTTGGTACCACCGACCC 359
consensus_3290#1      ACCCTGGCTTTACACCACGNTTGCTCGTTT--TGGTA--CCCACCCGG-ACCCCC--TCC 88
                           **    ***  **  ** *  * **    **   * *    ** *** **   **

consensus_3290#0      CTCCACCCCCCCCCCCCCCAACTCTTT-CGCAAT-CCAATAAT-CGTAGCGTACGCGCAA 416
consensus_3290#1      ATTCCCCCCCCCCCCACCCAACTCTTTTCGCAATTCCAATAATTCGTAGCGTACGCGCAA 148
                       * * ********** *********** ****** ******** ****************

consensus_3290#0      CACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCG 476
consensus_3290#1      CACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCG 208
                      ************************************************************

consensus_3290#0      GGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAA 536
consensus_3290#1      GGAAAAAA--AAAAAAAAAACCT------CTCGTGCCGNNTTCGTTGCCTCG-------- 252
                      *****  *  * **** ****           ***  *     * ** *  *        

consensus_3290#0      CGATGCTGCGAATTTCGGTACCGGAAATATTTAATTTAAAAGACCCGCCGAGGAGGGAAA 596
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      TCACAGGTCAGGCAGTAGGCGTGCGTAGGAAAAATAAGAAGAAAATCACACTACACACAA 656
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      ACAGGTGAAACAAAGGGAAGAATAAAAAAGACACACACACACACACACACCCACACATAC 716
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      AATCATTTATTGGTAAAACGAACGAACTGCGCAATAGTGTAAAATAACAATCATAATAGT 776
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      GGTTTCGTTAATGACGTCAGATAAGATTGAATATTAATATAAAGGATAGCAAAAAAAACG 836
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      AGTAAAGACAGAAAAGAGAGAGAGAGAGAGAGAGACACACACGGCACAGATTTGGACCTA 896
consensus_3290#1      ------------------------------------------------------------
                                                                                  

consensus_3290#0      TAC 899
consensus_3290#1      ---