cluster # 3295

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Anopheles gambiae
cluster # 3295 cluster # 3295 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3295#0 length = 1207 sequences # 2

consensus_3295#1 length = 427 sequences # 1

consensusID : consensus_3295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1207
fasta sequence

                              [CCGCCCACGCGTCCGTGCTTTTTTCCTATACATTGACGTAGAACTAGAAGCTCGCGACCGAGTAGCAGTGACCGATAGAGGCACTAGAGGCACTAGAGACATACGCATTAATAGAGTCATGCCGCGAACGCTCTTCTACCGCTCTAGATAGTGAATGGGATACTACTACTCACCATCATGGCCAATCTGGCGATACTTGTGGGGAAGGGGGGATGTTGGGGTCATACAGTAAGCTGTATGATGCTACCTCCCTTCCTCCTCATTATCGTGCGATGGTAGAGGGTGCAAAATTAAGGTAATCTTATCAAATTACATACATTTTACAACTACTCATACCATTATCAAAAAAGATGTGCGATAAACCGGCCGACCGGTGGAAGTAAAGTGAAGGATAGTATCTAGTTTTACACGTCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCCAAAAACAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAGTTTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCGATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTGAAACACAATCTCTACACGTTTTTCGTCCGTTCAATGTGAAGCTGTCGCTGAAGTGGGAGAAGTAGAAAGCAGTCGCCGAGGAGGAGGACGAGGAGGTAGTAAAACAAAGCAAAAGCTAACGTACCATTTCCTGAGTGTAGTACATTTTCTATATATTATGTTAGTGGGAAAAGAAGTAGAGCACAGGGGGGTTCTAGCAGTTTGCAGTTTGTTAGGCACGAGAAAAGGGGAATCGATGGGCGAACGACTCGTGAGCAATTTTCTGTCCGTGTTGGCACGAAAGTGCGGGACGCGCAAAACCAATCCATTCCAATTTGCAATAAAAGCGATTCCTTCCGTTACAGTGAGTGTGCCCGTGGATGTAGGAGGCCGCTCGTTGAACACACACACACACATACACGCAAAGTAGGGCGCTAGA]

[+] EMBL BM630601             [CCGCCCACGCGTCCGTGCTTTTTTCCTATACATTGACGTAGAACTAGAAGCTCGCGACCGAGTAGCAGTGACCGATAGAGGCACTAGAGGCACTAGAGACATACGCATTAATAGAGTCATGCCGCGAACGCTCTTCTACCGCTCTAGATAGTGAATGGGATACTACTACTCACCATCATGGCCAATCTGGCGATACTTGTGGGGAAGGGGGGATGTTGGGGTCATACAGTAAGCTGTATGATGCTACCTCCCTTCCTCCTCATTATCGTGCGATGGTAGAGGGTGCAAAATTAAGGTAATCTTATCAAATTACATACATTTTACAACTACTCATACCATTATCAAAAAAGATGTGCGATAAACCGGCCGACCGGTGGAAGTAAAGTGAAGGATAGTATCTAGTTTTACACGTCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCCAAAAACAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAGTTTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM581495             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAACAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAG TTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCGATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTGAAACACAATCTCTACACGTTTTTCGTCCGTTCAATGTGAAGCTGTCGCTGAAGTGGGAGAAGTAGAAAGCAGTCGCCGAGGAGGAGGACGAGGAGGTAGTAAAACAAAGCAAAAGCTAACGTACCATTTCCTGAGTGTAGTACATTTTCTATATATTATGTTAGTGGGAAAAGAAGTAGAGCACAGGGGGGTTCTAGCAGTTTGCAGTTTGTTAGGCACGAGAAAAGGGGAATCGATGGGCGAACGACTCGTGAGCAATTTTCTGTCCGTGTTGGCACGAAAGTGCGGGACGCGCAAAACCAATCCATTCCAATTTGCAATAAAAGCGATTCCTTCCGTTACAGTGAGTGTGCCCGTGGATGTAGGAGGCCGCTCGTTGAACACACACACACACATACACGCAAAGTAGGGCGCTAGA]




>consensus_3295#0
CCGCCCACGCGTCCGTGCTTTTTTCCTATACATTGACGTAGAACTAGAAGCTCGCGACCG
AGTAGCAGTGACCGATAGAGGCACTAGAGGCACTAGAGACATACGCATTAATAGAGTCAT
GCCGCGAACGCTCTTCTACCGCTCTAGATAGTGAATGGGATACTACTACTCACCATCATG
GCCAATCTGGCGATACTTGTGGGGAAGGGGGGATGTTGGGGTCATACAGTAAGCTGTATG
ATGCTACCTCCCTTCCTCCTCATTATCGTGCGATGGTAGAGGGTGCAAAATTAAGGTAAT
CTTATCAAATTACATACATTTTACAACTACTCATACCATTATCAAAAAAGATGTGCGATA
AACCGGCCGACCGGTGGAAGTAAAGTGAAGGATAGTATCTAGTTTTACACGTCACGCTGG
CGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTC
TCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGC
TGCACCTTGGTGTGATCACACAAAAGTACCAGCCCAAAAACAAAACAAAAACACACACAC
ACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAGTTTGCTTGC
CGATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCT
TTCGATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTA
AAAAAGTTGAAACACAATCTCTACACGTTTTTCGTCCGTTCAATGTGAAGCTGTCGCTGA
AGTGGGAGAAGTAGAAAGCAGTCGCCGAGGAGGAGGACGAGGAGGTAGTAAAACAAAGCA
AAAGCTAACGTACCATTTCCTGAGTGTAGTACATTTTCTATATATTATGTTAGTGGGAAA
AGAAGTAGAGCACAGGGGGGTTCTAGCAGTTTGCAGTTTGTTAGGCACGAGAAAAGGGGA
ATCGATGGGCGAACGACTCGTGAGCAATTTTCTGTCCGTGTTGGCACGAAAGTGCGGGAC
GCGCAAAACCAATCCATTCCAATTTGCAATAAAAGCGATTCCTTCCGTTACAGTGAGTGT
GCCCGTGGATGTAGGAGGCCGCTCGTTGAACACACACACACACATACACGCAAAGTAGGG
CGCTAGA

consensusID : consensus_3295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [CCGAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAGCAAAACAAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGATACCGTTGAACCGAGTTGCTTGCCTATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCTATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTG]

[+] EMBL BM580966             [CCGAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAGCAAAACAAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGATACCGTTGAACCGAGTTGCTTGCCTATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCTATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTG]




>consensus_3295#1
CCGAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATCACGCTGGCGAAGTA
GTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACA
TGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCT
TGGTGTGATCACACAAAAGTACCAGCCAAAAAGCAAAACAAAAACAAAAACACACACACA
CACAACAATACAGGACAGGCAAAGGACTCATACGATACCGTTGAACCGAGTTGCTTGCCT
ATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTT
CTATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAA
AAAGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3295#0      CCGCCCACGCGTCCGTGCTTTTTTCCTATACATTGACGTAGAACTAGAAGCTCGCGACCG 60
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      AGTAGCAGTGACCGATAGAGGCACTAGAGGCACTAGAGACATACGCATTAATAGAGTCAT 120
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      GCCGCGAACGCTCTTCTACCGCTCTAGATAGTGAATGGGATACTACTACTCACCATCATG 180
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      GCCAATCTGGCGATACTTGTGGGGAAGGGGGGATGTTGGGGTCATACAGTAAGCTGTATG 240
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      ATGCTACCTCCCTTCCTCCTCATTATCGTGCGATGGTAGAGGGTGCAAAATTAAGGTAAT 300
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      CTTATCAAATTACATACATTTTACAACTACTCATACCATTATCAAAAAAGATGTGCGATA 360
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      AACCGGCCGACCGGTGGAAGTAAA-GTGAAGGATA-GTATCTAGTT-TTACACGTCACGC 417
consensus_3295#1      ----------CCGAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATCACGC 50
                                ***   ***   *  **     * *  * ** * ** ****** ******

consensus_3295#0      TGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGT 477
consensus_3295#1      TGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGT 110
                      ************************************************************

consensus_3295#0      TTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGT 537
consensus_3295#1      TTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGT 170
                      ************************************************************

consensus_3295#0      TGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCCAAAAACAAAACAAAAACA---- 593
consensus_3295#1      TGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAGCAAAACAAAAACAAAAA 230
                      ************************************* **** *************    

consensus_3295#0      --CACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAG 651
consensus_3295#1      CACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGATACCGTTGAACCGAG 290
                        ******************************************* ** ***********

consensus_3295#0      TTTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCG 711
consensus_3295#1      TT-GCTTGCCTATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCG 349
                      ** ******* *************************************************

consensus_3295#0      TTTACGCCTTTCGATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGAT 771
consensus_3295#1      TTTACGCCTTTCTATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGAT 409
                      ************ ***********************************************

consensus_3295#0      AGAAAACTAAAAAAGTTGAAACACAATCTCTACACGTTTTTCGTCCGTTCAATGTGAAGC 831
consensus_3295#1      AGAAAACTAAAAAAGTTG------------------------------------------ 427
                      ******************                                          

consensus_3295#0      TGTCGCTGAAGTGGGAGAAGTAGAAAGCAGTCGCCGAGGAGGAGGACGAGGAGGTAGTAA 891
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      AACAAAGCAAAAGCTAACGTACCATTTCCTGAGTGTAGTACATTTTCTATATATTATGTT 951
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      AGTGGGAAAAGAAGTAGAGCACAGGGGGGTTCTAGCAGTTTGCAGTTTGTTAGGCACGAG 1011
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      AAAAGGGGAATCGATGGGCGAACGACTCGTGAGCAATTTTCTGTCCGTGTTGGCACGAAA 1071
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      GTGCGGGACGCGCAAAACCAATCCATTCCAATTTGCAATAAAAGCGATTCCTTCCGTTAC 1131
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      AGTGAGTGTGCCCGTGGATGTAGGAGGCCGCTCGTTGAACACACACACACACATACACGC 1191
consensus_3295#1      ------------------------------------------------------------
                                                                                  

consensus_3295#0      AAAGTAGGGCGCTAGA 1207
consensus_3295#1      ----------------