cluster # 3296

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Anopheles gambiae
cluster # 3296 cluster # 3296 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3296#0 length = 972 sequences # 2

consensus_3296#1 length = 454 sequences # 1

consensusID : consensus_3296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 972
fasta sequence

                              [CCGGCGAGCGACGACACTACCAGCAGCAGCAACAACGTAAACAACAACGCTTATTCCACAGTGAAGTGCCCCTGCTAGCCCTGTTCCGATCGTGGCACAACGTGTGTGATACTGTTTGTGTGCGCGCTGTGACGACAGAACGCGTGAAGGAACAGCAACAGCACGCATTTTCCACGCCTTTTCCGATGTCGTGCAGTTGAGCTTCTGTTCGCAGTTGGTGGCTGCGCTGCAGTGTGCGGCGTCTGTGTGCGTGTTGGTGAATTTTATGTTTAGTGTTTGCGTTTGTTTTGCGTTTCGCTCGCAGCAGCGTGGTTTTCGGTTGCGGTTTTAGTTATTTCTACGCCGCGGCAATAGCCAACTTTTCGTGCCCACCAGAAGGGCGTATGTGTGTATGTAAAGTGTTTACGTGAGAATTCAGTGAGCAAAGTGTTGTCTAGTGGGATGCAATGTAAAAGAAAGCTCTCATAGAGCCACCGAAAATCAAACCGCGGAAAGTTTTAAGTTTCATAGCAGCTCCAACGCAAAGTTCAGTGTATGTTCTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACTTGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAACGTGTGTGTTTGCGTGTGAGTGCCTCCTCTCCCCACTATCTCTGTAAAACCTCCCTCACATACCCTCCCCCCCCACCCCCCTCAACTCGGTGGCATAACACGTGGTCAAGGTGGAGCACGGTACGACAACAGGGGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAGTGGCGGCAGCAGCAGCCTCCGGCAACGTGGTTTGCGATAAGGTGCTCAACCTGATCAACAACAACAACAACAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGGCGACTCGCGCAAACGGCCCCTG]

[+] EMBL BM625143             [CCGGCGAGCGACGACACTACCAGCAGCAGCAACAACGTAAACAACAACGCTTATTCCACAGTGAAGTGCCCCTGCTAGCCCTGTTCCGATCGTGGCACAACGTGTGTGATACTGTTTGTGTGCGCGCTGTGACGACAGAACGCGTGAAGGAACAGCAACAGCACGCATTTTCCACGCCTTTTCCGATGTCGTGCAGTTGAGCTTCTGTTCGCAGTTGGTGGCTGCGCTGCAGTGTGCGGCGTCTGTGTGCGTGTTGGTGAATTTTATGTTTAGTGTTTGCGTTTGTTTTGCGTTTCGCTCGCAGCAGCGTGGTTTTCGGTTGCGGTTTTAGTTATTTCTACGCCGCGGCAATAGCCAACTTTTCGTGCCCACCAGAAGGGCGTATGTGTGTATGTAAAGTGTTTACGTGAGAATTCAGTGAGCAAAGTGTTGTCTAGTGGGATGCAATGTAAAAGAAAGCTCTCATAGAGCCACCGAAAATCAAACCGCGGAAAGTTTTAAGTTTCATAGCAGCTCCAACGCAAAGTTCAGTGTATGTTCTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACTTGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAAC                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM643242             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccgGTTCTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACTTGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAACGTGTGTGTTTGCGTGTGAGTGCCTCCTCTCCCCACTATCTCTGTAAAACCTCCCTCACATACCCTCCCCCCCCACCCCCCTCAACTCGGTGGCATAACACGTGGTCAAGGTGGAGCACGGTACGACAACAGGGGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAGTGGCGGCAGCAGCAGCCTCCGGCAACGTGGTTTGCGATAAGGTGCTCAACCTGATCAACAACAACAACAACAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGGCGACTCGCGCAAACGGCCCCTG]




>consensus_3296#0
CCGGCGAGCGACGACACTACCAGCAGCAGCAACAACGTAAACAACAACGCTTATTCCACA
GTGAAGTGCCCCTGCTAGCCCTGTTCCGATCGTGGCACAACGTGTGTGATACTGTTTGTG
TGCGCGCTGTGACGACAGAACGCGTGAAGGAACAGCAACAGCACGCATTTTCCACGCCTT
TTCCGATGTCGTGCAGTTGAGCTTCTGTTCGCAGTTGGTGGCTGCGCTGCAGTGTGCGGC
GTCTGTGTGCGTGTTGGTGAATTTTATGTTTAGTGTTTGCGTTTGTTTTGCGTTTCGCTC
GCAGCAGCGTGGTTTTCGGTTGCGGTTTTAGTTATTTCTACGCCGCGGCAATAGCCAACT
TTTCGTGCCCACCAGAAGGGCGTATGTGTGTATGTAAAGTGTTTACGTGAGAATTCAGTG
AGCAAAGTGTTGTCTAGTGGGATGCAATGTAAAAGAAAGCTCTCATAGAGCCACCGAAAA
TCAAACCGCGGAAAGTTTTAAGTTTCATAGCAGCTCCAACGCAAAGTTCAGTGTATGTTC
TTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACTT
GTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAACG
TGTGTGTTTGCGTGTGAGTGCCTCCTCTCCCCACTATCTCTGTAAAACCTCCCTCACATA
CCCTCCCCCCCCACCCCCCTCAACTCGGTGGCATAACACGTGGTCAAGGTGGAGCACGGT
ACGACAACAGGGGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAGTGGCGGCAGCAGCAGCC
TCCGGCAACGTGGTTTGCGATAAGGTGCTCAACCTGATCAACAACAACAACAACAGTATA
ATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGGCGACTCGCGC
AAACGGCCCCTG

consensusID : consensus_3296#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [AGGCAAGAATTCGGCACGTGGCTGATCAACAACAACAACAACCAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGTGCGACTCGCGCAAACGGCCCCTGGACGACGGTACGGACGATGGCACCTCCAAACGGTCACACTTCAGCACCAACGCTACGGGAACTACCACCGCCACCACTACCACAGCTACCAATGGCGGCGGAGACAACTATCACTTCAAGACGCTGGTACCGTCGGTCGCGGCCGGTGCCATCATCGGCAAGGGCGGCGAAACGATCGCCTCGCTACAGAAGGATGCCGGTGCCCGGGTGAAGATGTCCAAGGCGCACGACTTCTATCCCGGTACCANCGAGCGTATCTTGTCTCATTACGCGGCACGGTCGAGGGCATCCTGGCCCGTGCTCGAGTTTTATCACCGGGACAAGATACGCGA]

[+] EMBL BX468868             [AGGCAAGAATTCGGCACGTGGCTGATCAACAACAACAACAACCAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGTGCGACTCGCGCAAACGGCCCCTGGACGACGGTACGGACGATGGCACCTCCAAACGGTCACACTTCAGCACCAACGCTACGGGAACTACCACCGCCACCACTACCACAGCTACCAATGGCGGCGGAGACAACTATCACTTCAAGACGCTGGTACCGTCGGTCGCGGCCGGTGCCATCATCGGCAAGGGCGGCGAAACGATCGCCTCGCTACAGAAGGATGCCGGTGCCCGGGTGAAGATGTCCAAGGCGCACGACTTCTATCCCGGTACCANCGAGCGTATCTTGTCTCATTACGCGGCACGGTCGAGGGCATCCTGGCCCGTGCTCGAGTTTTATCACCGGGACAAGATACGCGA]




>consensus_3296#1
AGGCAAGAATTCGGCACGTGGCTGATCAACAACAACAACAACCAGTATAATGGCAGCCGA
TGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGTGCGACTCGCGCAAACGGCCCC
TGGACGACGGTACGGACGATGGCACCTCCAAACGGTCACACTTCAGCACCAACGCTACGG
GAACTACCACCGCCACCACTACCACAGCTACCAATGGCGGCGGAGACAACTATCACTTCA
AGACGCTGGTACCGTCGGTCGCGGCCGGTGCCATCATCGGCAAGGGCGGCGAAACGATCG
CCTCGCTACAGAAGGATGCCGGTGCCCGGGTGAAGATGTCCAAGGCGCACGACTTCTATC
CCGGTACCANCGAGCGTATCTTGTCTCATTACGCGGCACGGTCGAGGGCATCCTGGCCCG
TGCTCGAGTTTTATCACCGGGACAAGATACGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3296#0      CCGGCGAGCGACGACACTACCAGCAGCAGCAACAACGTAAACAACAACGCTTATTCCACA 60
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      GTGAAGTGCCCCTGCTAGCCCTGTTCCGATCGTGGCACAACGTGTGTGATACTGTTTGTG 120
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      TGCGCGCTGTGACGACAGAACGCGTGAAGGAACAGCAACAGCACGCATTTTCCACGCCTT 180
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      TTCCGATGTCGTGCAGTTGAGCTTCTGTTCGCAGTTGGTGGCTGCGCTGCAGTGTGCGGC 240
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      GTCTGTGTGCGTGTTGGTGAATTTTATGTTTAGTGTTTGCGTTTGTTTTGCGTTTCGCTC 300
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      GCAGCAGCGTGGTTTTCGGTTGCGGTTTTAGTTATTTCTACGCCGCGGCAATAGCCAACT 360
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      TTTCGTGCCCACCAGAAGGGCGTATGTGTGTATGTAAAGTGTTTACGTGAGAATTCAGTG 420
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      AGCAAAGTGTTGTCTAGTGGGATGCAATGTAAAAGAAAGCTCTCATAGAGCCACCGAAAA 480
consensus_3296#1      ------------------------------------------------------------
                                                                                  

consensus_3296#0      TCAAACCGCGGAAAGTTTTAAGTTTCATAGCAGCTCCAACGCAA-AGTTCAGTGTATGTT 539
consensus_3296#1      --------------------------------------AGGCAAGAATTCGGCACGTGGC 22
                                                            * **** * *** *    **  

consensus_3296#0      CTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACT 599
consensus_3296#1      TGATCAACAACAACAACAACCAGTA--TAATGGCAGCCGATGCCGCCATGGA-CACGACC 79
                         *  * **     ** * * **   *  * *       *** *   ** * ** *** 

consensus_3296#0      TGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAAC 659
consensus_3296#1      TGTCCGAGCCCGGAACT--GGTGCGACTCGCGCAAACGGCCCCTGGACGACGGTACGGAC 137
                      ***** * *    * **  **    * *  * * ***    **          * *  **

consensus_3296#0      GTGTGTGTTTGCGTGTGAGTGCCTCCTCTCCCCACTATCTCTGTAAAACCTCCCTCACAT 719
consensus_3296#1      GATGGCACCTCCAAACG---GTCACACTTCAGCACCAACGCTACGGGAACTACCACCGCC 194
                      *   *    * *    *   * * *   **  *** * * **     * ** ** *    

consensus_3296#0      ACCCTCCCCCCCCACCCCCCTCAACTCGGTGGCATAACACGTGGTCAAGGTGG-AGCACG 778
consensus_3296#1      ACCACTACCACAGCTACCAATGGCGGCGGAGACA-ACTATCACTTCAAGACGCTGGTACC 253
                      ***    ** *     **  *     *** * ** *  *     *****  *   * ** 

consensus_3296#0      GTACGACAACAGGGGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAGTGGCG-GCAGCAGCA 837
consensus_3296#1      GTCGGTCGCGGCCGGTGCCATCATCGGCAAGGGCGGCGAAACGATCGCCTCGCTACAGAA 313
                      **  * *      ** * *  *  *****   ** **      *  * *  **  *** *

consensus_3296#0      GCCTCCGGCAACGTGGTTTGCGAT----AAGGTGCTCAACCTGATCAACAACAACAACAA 893
consensus_3296#1      GGATGCCGGTGCCCGGGTGAAGATGTCCAAGGCGCACGACTTCTATCCCGGTACCANCGA 373
                      *  * * *   *  ** *   ***    **** ** * ** *      *   * ** * *

consensus_3296#0      CAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGGCGA 953
consensus_3296#1      GCGTATCTTGTCTCATTACGCGGC-ACGGTCGAGGGC-ATCCTGGCCCGTGCTCGAGTTT 431
                        ****  ** *     * ** ** * ** *  *  *  ***  *****     * *   

consensus_3296#0      C-TCGCGCAAACGGCCCCTG--- 972
consensus_3296#1      TATCACCGGGACAAGATACGCGA 454
                        ** *    **       *