cluster # 3323

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Anopheles gambiae
cluster # 3323 cluster # 3323 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3323#0 length = 780 sequences # 2

consensus_3323#1 length = 434 sequences # 1

consensusID : consensus_3323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 780
fasta sequence

                              [AAACAATAATTTCTTGAAAGTAAACAAAACCTAAAAACCATAAATTCCCAATACTCTATAACTAAACCGTTGGTAACGTGAGTGAGCAAAACAGAGCACAGAGCGAAAAGCGTGGTTTGAGCGAAAAAGTGAAGAAACGTTTCAAAACACAACCAACACTTTTTTCAATCTAACCGCGTTTTGAACCGCCGAAATTGAACTAAAAATGCCGCAAAAAAAATAAAACTAAACTTTCAAATACTACTTCCACTAT-AAGACACACACAC----ACACAAGCAAAGTAGCACACAGGCAAAACATACGCACACCACACAATCACAGCCGGATCGTAGTTGAAAACTAAAGAAGAGAGAGACAAGACAAAAGGAGATGAATGTGGAAAG-AAAAAGCAACAACACAGAACAGACACACTGACACACACTCTCAG-AAAAAACACAAACTTACAAAACAATGGTAGGATTTGTCATGCAAAGCAGATAAAAGTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAAATAAAACCTAAAATGAGCACACAAACACACAAACATACT--ACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATT]

[+] EMBL BX616895             [AAACAATAATTTCTTGAAAGTAAACAAAACCTAAAAACCATAAATTCCCAATACTCTATAACTAAACCGTTGGTAACGTGAGTGAGCAAAACAGAGCACAGAGCGAAAAGCGTGGTTTGAGCGAAAAAGTGAAGAAACGTTTCAAAACACAACCAACACTTTTTTCAATCTAACCGCGTTTTGAACCGCCGAAATTGAACTAAAAATGCCGCAAAAAAAATAAAACTAAACTTTCAAATACTACTTCCACTAT AAGACACACACAC    ACACAAGCAAAGTAGCACACAGGCAAAACATACGCACACCACACAATCACAGCCGGATCGTAGTTGAAAACTAAAGAAGAGAGAGACAAGACAAAAGGAGATGAATGTGGAAAG AAAAAGCAACAACACAGAACAGACACACTGACACACACTCTCAG AAAAAACACAAACTTACAAAACAATGGTAGGATTTGTCATGCAAAGCAGATAAAAGTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAAATAAAACCTAAAATGAGCACACAAACACACAAACATACT  ACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAG                                          ]
[+] EMBL BM624181             [                                                                                                                                                                                                                               ccgTAAACTTTCAAATACTACTTCCACTATAAAGACACACACACACAGACACAAGCAAAGTAGCACACAGGCAAAACATACGCACGCCGCACAATCACAGCCGGATCGTAGTTGTTAACTAAAGAAGAGAGAGACAAGACAAAAGGAGATGAATGTGGAAAGAAAAAAGCAACAACACAGAACAAACACACTGACACACACACTCAGAAAAAAACGCAAACTTACAAAACAATGGTAGGATTTGTCATGCAAAGCAGATAAAAGTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAAATAAAACCTAAAATGAGCACACAAACACACAAACATACTACACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAACAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATT]




>consensus_3323#0
AAACAATAATTTCTTGAAAGTAAACAAAACCTAAAAACCATAAATTCCCAATACTCTATA
ACTAAACCGTTGGTAACGTGAGTGAGCAAAACAGAGCACAGAGCGAAAAGCGTGGTTTGA
GCGAAAAAGTGAAGAAACGTTTCAAAACACAACCAACACTTTTTTCAATCTAACCGCGTT
TTGAACCGCCGAAATTGAACTAAAAATGCCGCAAAAAAAATAAAACTAAACTTTCAAATA
CTACTTCCACTATAAGACACACACACACACAAGCAAAGTAGCACACAGGCAAAACATACG
CACACCACACAATCACAGCCGGATCGTAGTTGAAAACTAAAGAAGAGAGAGACAAGACAA
AAGGAGATGAATGTGGAAAGAAAAAGCAACAACACAGAACAGACACACTGACACACACTC
TCAGAAAAAACACAAACTTACAAAACAATGGTAGGATTTGTCATGCAAAGCAGATAAAAG
TCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAAA
TAAAACCTAAAATGAGCACACAAACACACAAACATACTACACACACGCATACACACACAC
ACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTT
GGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAA
CTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATT

consensusID : consensus_3323#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TCCCGTCGTTCCAATGTGGAGGTTTTGTTGTTGCGCTTGCTGCTCTTTTTCGCGCGTTCGCGTCCAATCTTCTCCGCTTGGCGGACCCAGCCGCCGGACACAGGATGAAGTGTGCTGTTTTATTGGAATGGTCACCGTTTGGTGGGGCCCCTTGCAGGCCATCTTAATCGGTGTGCACCCTAGAAAAAACACACAAACATACTACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATTCTAATAAAAGTGACGTTAATATAAAACAA]

[+] EMBL BX613416             [TCCCGTCGTTCCAATGTGGAGGTTTTGTTGTTGCGCTTGCTGCTCTTTTTCGCGCGTTCGCGTCCAATCTTCTCCGCTTGGCGGACCCAGCCGCCGGACACAGGATGAAGTGTGCTGTTTTATTGGAATGGTCACCGTTTGGTGGGGCCCCTTGCAGGCCATCTTAATCGGTGTGCACCCTAGAAAAAACACACAAACATACTACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATTCTAATAAAAGTGACGTTAATATAAAACAA]




>consensus_3323#1
TCCCGTCGTTCCAATGTGGAGGTTTTGTTGTTGCGCTTGCTGCTCTTTTTCGCGCGTTCG
CGTCCAATCTTCTCCGCTTGGCGGACCCAGCCGCCGGACACAGGATGAAGTGTGCTGTTT
TATTGGAATGGTCACCGTTTGGTGGGGCCCCTTGCAGGCCATCTTAATCGGTGTGCACCC
TAGAAAAAACACACAAACATACTACACACACGCATACACACACACACACACTGACAGAGG
AGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAG
TAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAA
AAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATTCTAATAAAAGTGACG
TTAATATAAAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3323#0      AAACAATAATTTCTTGAAAGTAAACAAAACCTAAAAACCATAAATTCCCAATACTCTATA 60
consensus_3323#1      ------------------------------------------------------------
                                                                                  

consensus_3323#0      ACTAAACCGTTGGTAACGTGAGTGAGCAAAACAGAGCACAGAGCGAAAAGCGTGGTTTGA 120
consensus_3323#1      ------------------------------------------------------------
                                                                                  

consensus_3323#0      GCGAAAAAGTGAAGAAACGTTTCAAAACACAACCAACACTTTTTTCAATCTAACCGCGTT 180
consensus_3323#1      ------------------------------------------------------------
                                                                                  

consensus_3323#0      TTGAACCGCCGAAATTGAACTAAAAATGCCGCAAAAAAAATAAAACTAAACTTTCAAATA 240
consensus_3323#1      ------------------------------------------------------------
                                                                                  

consensus_3323#0      CTACTTCCACTATAAGACACACACACACACAAGCAAAGTAGCACACAGGCAAAACATACG 300
consensus_3323#1      ------------------------------------------------------------
                                                                                  

consensus_3323#0      CACACCACACAATCACAGCCGGATCGTAGTTGAAAACTAAAGAAGAGAGAGACAAGACAA 360
consensus_3323#1      ---------------------------------------------------------TCC 3
                                                                                  

consensus_3323#0      AAGGAGATGAATGTGGAAAGAAAAAGCAACAACACAGAACAGACACACTGACACACACTC 420
consensus_3323#1      CGTCGTTCCAATGTGGA--GGTTTTGTTGTTGCGCTTGCTGCTCTTTTTCGCGCGTTCGC 61
                               ********  *     *      * *        *    *  * *   * *

consensus_3323#0      TCAGAAAAAACACAAACTTACAAAAC-AATGGTAGGATTTGTCATGCAAAGCAGATAAAA 479
consensus_3323#1      GTCCAATCTTCTCCGCTTGGCGGACCCAGCCGCCGGACACAGGATG--AAGTGTGCTGTT 119
                          **    * *    *  *  * * *   *  ***      ***  ***         

consensus_3323#0      GTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAA 539
consensus_3323#1      TTATTGGAATGGTCACCGTT--TGGTGGGGCCCCTTGCAGGCCATCTTAATCGGTG---- 173
                       * *   **      **     *   *    * *  **  ** * *  *** * *     

consensus_3323#0      ATAAAACCTAAAATGAGCACACAAACACACAAACATACTACACACACGCATACACACACA 599
consensus_3323#1      -TGCACCCTAGAAA--------AAACACACAAACATACTACACACACGCATACACACACA 224
                       *  * **** **         **************************************

consensus_3323#0      CACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTT 659
consensus_3323#1      CACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTT 284
                      ************************************************************

consensus_3323#0      TGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGA 719
consensus_3323#1      TGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGA 344
                      ************************************************************

consensus_3323#0      ACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAAT 779
consensus_3323#1      ACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAAT 404
                      ************************************************************

consensus_3323#0      T----------------------------- 780
consensus_3323#1      TCTAATAAAAGTGACGTTAATATAAAACAA 434
                      *