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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence
[TTCGATTAGTTTTTTCTTATTGTTGTCGCTTGTTTCTTATGTTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACGAACCTTTATAGCGAGCTGAATCCACACGAATCGAAACGGTACAGCGAGGACGATATCGAAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGAAAAAAAAAATCTCACACACCATTTCCAGTGACAGTCTGTCCCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGTGAGACATGGTACTTTGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAATGGACAAGAAGGTCCAGGATCAGAGCGTGCACATGACAAACGGTAGCTGTATGTTTATATTCTTAGCCAAGTTTTTCCCCGAAAATGTGGCTGAAGAGCTGGTACAGGAGGTAACGCAGCATCTGTTCTTTCTACAAATAAAACAAGCCATATTGTCGATGGATGTGTACTGTCCGCCGGAGATTCTGTGTTGCTTGCCTCATACGCGGTGCAAGCCAAGTACGGCGATTATGACGAGCAGTATGCAAGCCAGGGATGCTGA]
[+] EMBL CNS08S05 [TTCGATTAGTTTTTTCTTATTGTTGTCGCTTGTTTCTTATGTTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACGAACCTTTATAGCGAGCTGAATCCACACGAATCGAAACGGTACAGCGAGGACGATATCGAAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGAAAAAAAAAATCTCACACACCATTTCCAGTGACAGTCTGTCCCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGTGAGACATGGTACTTTGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAATGGACAAGAAGGTCCAGGATCAGAGCGTGCACATGACAAACGGTAGCTGTATGTTTATATTCTTAGCCAAGTTTTTCCCCGAAAATGTGGCTGAAGAGCTGGTACAGGAGGTAACGCAGCATCTGTTCTTTCTACAAATAAAACAAGCCATATTGTCGATGGATGTGTACTGTCCGCCGGAGATTCTGTGTTGCTTGCCTCATACGCGGTGCAAGCCAAGTACGGCGATTATGACGAGCAGTATGCAAGCCAGGGATGCTGA]
[+] EMBL BM624048 [ ccgGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTGGCAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACAAACCTTTAT AGCTGAATCCACACGAATCGAAACGGTACAGCGAGGACGATAGCG AAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATTTCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGCGAGACATGGTACTTTGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAAT ]
consensusID : consensus_3327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[CCGCGGACGCGTGGGTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACAAACCTTTATAGCTGAATCCACACGAATCGAAACGGTACAGCGAGAACGATATCGAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATTTCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGA]
[+] EMBL BM643088 [CCGCGGACGCGTGGGTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACAAACCTTTATAGCTGAATCCACACGAATCGAAACGGTACAGCGAGAACGATATCGAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATTTCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3327#0 TTCGATTAGTTTTTTCTTATTGTTGTCGCTTGTTTCTTATGTTTGCTACGAAGCTGTACC 60
consensus_3327#1 -------------------CCGCGGACGCGTG--------GGTTGCTACGAAGCTGTACC 33
* * *** ** * ******************
consensus_3327#0 GTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTT 120
consensus_3327#1 GTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTT 93
************************************************************
consensus_3327#0 GTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCA 180
consensus_3327#1 GTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCA 153
************************************************************
consensus_3327#0 GTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATA 240
consensus_3327#1 GTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATA 213
************************************************************
consensus_3327#0 CGATACGATTGTTCAAACGAACCTTTATAGCGAGCTGAATCCACACGAATCGAAACGGTA 300
consensus_3327#1 CGATACGATTGTTCAAACAAACCTTTAT----AGCTGAATCCACACGAATCGAAACGGTA 269
****************** ********* ****************************
consensus_3327#0 CAGCGAGGACGATATCGAAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAAC 360
consensus_3327#1 CAGCGAGAACGATATCGAAA-TACAACTACTAGAAACTCGAACCACTAGCGTCCATCAAC 328
******* ************ ***************************************
consensus_3327#0 TCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGA 420
consensus_3327#1 TCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGA 388
************************************************************
consensus_3327#0 ACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAA 480
consensus_3327#1 ACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAA 448
************************************************************
consensus_3327#0 GCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGAAAAAAAAAATCTCACACACCATT 540
consensus_3327#1 GCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATT 508
************************************* ** ****** *** ** ***
consensus_3327#0 TCCAGTGACAGTCTGTCCCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAAC 600
consensus_3327#1 TCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAAC 568
******** *** *** *******************************************
consensus_3327#0 AGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGTGAGACATGGTACTT 660
consensus_3327#1 AGGTAGATACTTGTTTGAATTAATATGTCGA----------------------------- 599
*******************************
consensus_3327#0 TGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAATGGACAAGAAGGT 720
consensus_3327#1 ------------------------------------------------------------
consensus_3327#0 CCAGGATCAGAGCGTGCACATGACAAACGGTAGCTGTATGTTTATATTCTTAGCCAAGTT 780
consensus_3327#1 ------------------------------------------------------------
consensus_3327#0 TTTCCCCGAAAATGTGGCTGAAGAGCTGGTACAGGAGGTAACGCAGCATCTGTTCTTTCT 840
consensus_3327#1 ------------------------------------------------------------
consensus_3327#0 ACAAATAAAACAAGCCATATTGTCGATGGATGTGTACTGTCCGCCGGAGATTCTGTGTTG 900
consensus_3327#1 ------------------------------------------------------------
consensus_3327#0 CTTGCCTCATACGCGGTGCAAGCCAAGTACGGCGATTATGACGAGCAGTATGCAAGCCAG 960
consensus_3327#1 ------------------------------------------------------------
consensus_3327#0 GGATGCTGA 969
consensus_3327#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||