cluster # 333

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Anopheles gambiae
cluster # 333 cluster # 333 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_333#0 length = 773 sequences # 1

consensus_333#1 length = 555 sequences # 1

consensusID : consensus_333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 773
fasta sequence

                              [GGCAGAATCGCCACGAGNTGATCAAGTACGAAGCGGGCATCCTCTCACTGTATCGACTTTGAGACCCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAGACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAAGCGGACGTTCTCTAACGGCTCGCCAAAGATTGGACGCGAGAGTTACAGTGCTATAGCGATTGTATATTTGCTATGCAAAAGAACATTACAAAGAAGGTGGTTATTGTGCAGATTTAAAATCAAATCTCCCGAACTTAAGCGTCAGCAAGGCATAAGATGATTAATTTTAAGAGCAGAAAAAAAACCTTTACGACAGGGTTGTAATCTGCGAGCAAAGATTTCAAATAGGTTACTACATCAGGTNACAGTCATAGGACTAGATTAGAATTGTAATCAAACGGTATCNGGTATACGGNCTAGTNAAGTTAGATGGCATTAAGAAACGGAAATGCCTCAAAACACATTTACGAAAAGTCTGAAA]

[+] EMBL BX467304             [GGCAGAATCGCCACGAGNTGATCAAGTACGAAGCGGGCATCCTCTCACTGTATCGACTTTGAGACCCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAGACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAAGCGGACGTTCTCTAACGGCTCGCCAAAGATTGGACGCGAGAGTTACAGTGCTATAGCGATTGTATATTTGCTATGCAAAAGAACATTACAAAGAAGGTGGTTATTGTGCAGATTTAAAATCAAATCTCCCGAACTTAAGCGTCAGCAAGGCATAAGATGATTAATTTTAAGAGCAGAAAAAAAACCTTTACGACAGGGTTGTAATCTGCGAGCAAAGATTTCAAATAGGTTACTACATCAGGTNACAGTCATAGGACTAGATTAGAATTGTAATCAAACGGTATCNGGTATACGGNCTAGTNAAGTTAGATGGCATTAAGAAACGGAAATGCCTCAAAACACATTTACGAAAAGTCTGAAA]




>consensus_333#0
GGCAGAATCGCCACGAGNTGATCAAGTACGAAGCGGGCATCCTCTCACTGTATCGACTTT
GAGACCCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAA
AATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCC
GTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAGACCGCTACACGTGCGCCAT
CTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGT
CTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTA
CCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAAGCGGACGT
TCTCTAACGGCTCGCCAAAGATTGGACGCGAGAGTTACAGTGCTATAGCGATTGTATATT
TGCTATGCAAAAGAACATTACAAAGAAGGTGGTTATTGTGCAGATTTAAAATCAAATCTC
CCGAACTTAAGCGTCAGCAAGGCATAAGATGATTAATTTTAAGAGCAGAAAAAAAACCTT
TACGACAGGGTTGTAATCTGCGAGCAAAGATTTCAAATAGGTTACTACATCAGGTNACAG
TCATAGGACTAGATTAGAATTGTAATCAAACGGTATCNGGTATACGGNCTAGTNAAGTTA
GATGGCATTAAGAAACGGAAATGCCTCAAAACACATTTACGAAAAGTCTGAAA

consensusID : consensus_333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [CATTCCTCACGGACGGTGGCCAAATCAACGTCGAGGATGCCATCCAGCACAAGGTGCCCGTCGTCGGCATCAGCTACTCAACCTCGTACGACCACTATCTGCGCCAAATCGTCAAGTACGAAGCGGGCATCATCTCACTGATCGACTTTGAGACGCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAAACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAGCGGACGTTCTCTAACGGCTCGTCAAAGATTGGACGCGAGAGTTATAGTGCTATA]

[+] EMBL BX604806             [CATTCCTCACGGACGGTGGCCAAATCAACGTCGAGGATGCCATCCAGCACAAGGTGCCCGTCGTCGGCATCAGCTACTCAACCTCGTACGACCACTATCTGCGCCAAATCGTCAAGTACGAAGCGGGCATCATCTCACTGATCGACTTTGAGACGCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAAACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAGCGGACGTTCTCTAACGGCTCGTCAAAGATTGGACGCGAGAGTTATAGTGCTATA]




>consensus_333#1
CATTCCTCACGGACGGTGGCCAAATCAACGTCGAGGATGCCATCCAGCACAAGGTGCCCG
TCGTCGGCATCAGCTACTCAACCTCGTACGACCACTATCTGCGCCAAATCGTCAAGTACG
AAGCGGGCATCATCTCACTGATCGACTTTGAGACGCAAACCTTCGTGGACAAGCTTCAGG
ATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACG
ACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACG
GCGGCACCAAACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACG
TGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTG
TTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGA
AGTGCAAGATGATGTAAAAAGCGGACGTTCTCTAACGGCTCGTCAAAGATTGGACGCGAG
AGTTATAGTGCTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_333#0      ------------------------------------------------------------
consensus_333#1      CATTCCTCACGGACGGTGGCCAAATCAACGTCGAGGATGCCATCCAGCACAAGGTGCCCG 60
                                                                                 

consensus_333#0      ------------------------------GGCAGAATCGCCACGAGNTGATCAAGTACG 30
consensus_333#1      TCGTCGGCATCAGCTACTCAACCTCGTACGACCACTATCTGCGCCAAATCGTCAAGTACG 120
                                                     **  ***  * * *  *  *********

consensus_333#0      AAGCGGGCATCCTCTCACTGTATCGACTTTGAGACCCAAACCTTCGTGGACAAGCTTCAG 90
consensus_333#1      AAGCGGGCATCATCTCACTG-ATCGACTTTGAGACGCAAACCTTCGTGGACAAGCTTCAG 179
                     *********** ******** ************** ************************

consensus_333#0      GATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAAC 150
consensus_333#1      GATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAAC 239
                     ************************************************************

consensus_333#0      GACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAAC 210
consensus_333#1      GACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAAC 299
                     ************************************************************

consensus_333#0      GGCGGCACCAGACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGAC 270
consensus_333#1      GGCGGCACCAAACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGAC 359
                     ********** *************************************************

consensus_333#0      GTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATT 330
consensus_333#1      GTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATT 419
                     ************************************************************

consensus_333#0      GTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGG 390
consensus_333#1      GTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGG 479
                     ************************************************************

consensus_333#0      AAGTGCAAGATGATGTAAAAAAGCGGACGTTCTCTAACGGCTCGCCAAAGATTGGACGCG 450
consensus_333#1      AAGTGCAAGATGATGTAAAAA-GCGGACGTTCTCTAACGGCTCGTCAAAGATTGGACGCG 538
                     ********************* ********************** ***************

consensus_333#0      AGAGTTACAGTGCTATAGCGATTGTATATTTGCTATGCAAAAGAACATTACAAAGAAGGT 510
consensus_333#1      AGAGTTATAGTGCTATA------------------------------------------- 555
                     ******* *********                                           

consensus_333#0      GGTTATTGTGCAGATTTAAAATCAAATCTCCCGAACTTAAGCGTCAGCAAGGCATAAGAT 570
consensus_333#1      ------------------------------------------------------------
                                                                                 

consensus_333#0      GATTAATTTTAAGAGCAGAAAAAAAACCTTTACGACAGGGTTGTAATCTGCGAGCAAAGA 630
consensus_333#1      ------------------------------------------------------------
                                                                                 

consensus_333#0      TTTCAAATAGGTTACTACATCAGGTNACAGTCATAGGACTAGATTAGAATTGTAATCAAA 690
consensus_333#1      ------------------------------------------------------------
                                                                                 

consensus_333#0      CGGTATCNGGTATACGGNCTAGTNAAGTTAGATGGCATTAAGAAACGGAAATGCCTCAAA 750
consensus_333#1      ------------------------------------------------------------
                                                                                 

consensus_333#0      ACACATTTACGAAAAGTCTGAAA 773
consensus_333#1      -----------------------