|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1242 fasta sequence
[CCGCACCATTCGGAGTGTATGAGTGGCGCGTGTGATACCAGAACAGAACCCCGAAATCGGACTACTTTGCGTAAACGCCCACGGTGTGCTGCTTGCTCCATAAAGGTCAAACAACGCTCGTGCAGTGATATAGTGCTAAACGGAGTGCATCTTATGTGTTTTATAAGTGTAATCTTCCAAAAAATTGCTCACACCATCAGAAAACGTCACCATCTTGCGTGAAGTTCCAATCACTCATATGTGTTTTGCGGTACAAATGTACCACATGCGGCAGTGTCGTCGTCGGAAGTGAAACGCGAATGGGACAGGGAGGACAAATCTCTTGCAGAAATCCCACACACGTCTCAATTAGCTGTAAGTGATTAGCGCTTTCCGTGTATTGCTACAATCGTTTCAACACAACCGAGCAAAACCAGCATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACTGCTGCAGAACCTTGTCACAATCAAATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGATACTGTACGATCCGGGCAAGTTCCCGGCCCTGCTCGAGAAACCGTCCACCAAAACGCTCTACAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTGACCGAGCATCTGGAGATATTCGAGCGCCATCTGGACGAGCTGATACCGGATCGCAATTTCAGCGGTATCGGCATCATCGACTTCGAGTCCTGGCGGCCCATCTACCGGCAGAACTTTGGCTCGCTCCAACCGTACAAGGATCTGTCGGTCAAGATCGAACGCGAACGACACCCGTACTGGTCGGGCAACCATCTCGAACGGGAGGCGACCCGTCGATTCGAAGCAACAGGGCGCGAGTTTATGGAGCAAACGCTACTGCTAGCGAAACAGCGACGACCCCAAGCGGCCTGGGGTTACTATGCCTTTCCCTACTGCTTCAACATGAACGGTGCGGCTAGCACTCGCTCGGAAAACTGTTCACCGGAAGTGCAGCGAGAAAACAACCGCATCATGTGGCTGTTCGATGGATCGGACATCATCTTCCCATCTGTCTATCTGCGGGAAAAGCTATCACCAAGCGAACGGGAGCAGCTAAT]
[+] EMBL BM623662 [CCGCACCATTCGGAGTGTATGAGTGGCGCGTGTGATACCAGAACAGAACCCCGAAATCGGACTACTTTGCGTAAACGCCCACGGTGTGCTGCTTGCTCCATAAAGGTCAAACAACGCTCGTGCAGTGATATAGTGCTAAACGGAGTGCATCTTATGTGTTTTATAAGTGTAATCTTCCAAAAAATTGCTCACACCATCAGAAAACGTCACCATCTTGCGTGAAGTTCCAATCACTCATATGTGTTTTGCGGTACAAATGTACCACATGCGGCAGTGTCGTCGTCGGAAGTGAAACGCGAATGGGACAGGGAGGACAAATCTCTTGCAGAAATCCCACACACGTCTCAATTAGCTGTAAGTGATTAGCGCTTTCCGTGTATTGCTACAATCGTTTCAACACAACCGAGCAAAACCAGCATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACTGCTGCAGAACCTTGTCACAATCAAATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGATACTGTACGATCCGGGCAAGTTCCCGGCCC ]
[+] EMBL BX628458 [ CTCGGTCGTGCAAAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGATACTGTACGATCCGGGCAAGTTCCCGGCCCTGCTCGAGAAACCGTCCACCAAAACGCTCTACAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTGACCGAGCATCTGGAGATATTCGAGCGCCATCTGGACGAGCTGATACCGGATCGCAATTTCAGCGGTATCGGCATCATCGACTTCGAGTCCTGGCGGCCCATCTACCGGCAGAACTTTGGCTCGCTCCAACCGTACAAGGATCTGTCGGTCAAGATCGAACGCGAACGACACCCGTACTGGTCGGGCAACCATCTCGAACGGGAGGCGACCCGTCGATTCGAAGCAACAGGGCGCGAGTTTATGGAGCAAACGCTACTGCTAGCGAAACAGCGACGACCCCAAGCGGCCTGGGGTTACTATGCCTTTCCCTACTGCTTCAACATGAACGGTGCGGCTAGCACTCGCTCGGAAAACTGTTCACCGGAAGTGCAGCGAGAAAACAACCGCATCATGTGGCTGTTCGATGGATCGGACATCATCTTCCCATCTGTCTATCTGCGGGAAAAGCTATCACCAAGCGAACGGGAGCAGCTAAT]
consensusID : consensus_3330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[AGGCCAAGAATCCCGCACGAGTGGTATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACGTGCTGCAGAACCTTGTCACAATCAAGATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAGAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGGATACTGTACGATCCGGGCAAGATTCCCGGGCCCTGCNTCGAGAAACCGTCCAGCAAAACGCTCTACGAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTTGACCGA]
[+] EMBL BX466612 [AGGCCAAGAATCCCGCACGAGTGGTATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACGTGCTGCAGAACCTTGTCACAATCAAGATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAGAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGGATACTGTACGATCCGGGCAAGATTCCCGGGCCCTGCNTCGAGAAACCGTCCAGCAAAACGCTCTACGAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTTGACCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3330#0 CCGCACCATTCGGAGTGTATGAGTGGCGCGTGTGATACCAGAACAGAACCCCGAAATCGG 60
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 ACTACTTTGCGTAAACGCCCACGGTGTGCTGCTTGCTCCATAAAGGTCAAACAACGCTCG 120
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 TGCAGTGATATAGTGCTAAACGGAGTGCATCTTATGTGTTTTATAAGTGTAATCTTCCAA 180
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 AAAATTGCTCACACCATCAGAAAACGTCACCATCTTGCGTGAAGTTCCAATCACTCATAT 240
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 GTGTTTTGCGGTACAAATGTACCACATGCGGCAGTGTCGTCGTCGGAAGTGAAACGCGAA 300
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 TGGGACAGGGAGGACAAATCTCTTGCAGAAATCCCACACACGTCTCAATTAGCTGTAAGT 360
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 GATTAGCGCTTTCCGTGTATTGCTACAATCGTTTCAACACAACCGAGCAAAACCAGCATC 420
consensus_3330#1 ------------------------------AGGCCAAGA--ATCCCGCACGAGTGGTATC 28
*** * * * *** * * ***
consensus_3330#0 GTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCAC 480
consensus_3330#1 GTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCAC 88
************************************************************
consensus_3330#0 CCGTTCGACCACGCTATGGATGCTACTACTAC-TGCTGCAGAACCTTGTCACAATCAA-A 538
consensus_3330#1 CCGTTCGACCACGCTATGGATGCTACTACTACGTGCTGCAGAACCTTGTCACAATCAAGA 148
******************************** ************************* *
consensus_3330#0 TCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTT 598
consensus_3330#1 TCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTT 208
************************************************************
consensus_3330#0 AGCAGTGTCAACCGGACGTACTCGGTCGTGCAA-AACCGAAACGATACCTTCCGTGGCAA 657
consensus_3330#1 AGCAGTGTCAACCGGACGTACTCGGTCGTGCAAGAACCGAAACGATACCTTCCGTGGCAA 268
********************************* **************************
consensus_3330#0 CGCCGTCTCG-ATACTGTACGATCCGGGCAAGTTCCC--GGCCCTGCT-CGAGAAACCGT 713
consensus_3330#1 CGCCGTCTCGGATACTGTACGATCCGGGCAAGATTCCCGGGCCCTGCNTCGAGAAACCGT 328
********** ********************* * ** ******** ***********
consensus_3330#0 CCACCAAAACGCTCTAC-AAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCT-GACCGA 771
consensus_3330#1 CCAGCAAAACGCTCTACGAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTTGACCGA 388
*** ************* *********************************** ******
consensus_3330#0 GCATCTGGAGATATTCGAGCGCCATCTGGACGAGCTGATACCGGATCGCAATTTCAGCGG 831
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 TATCGGCATCATCGACTTCGAGTCCTGGCGGCCCATCTACCGGCAGAACTTTGGCTCGCT 891
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 CCAACCGTACAAGGATCTGTCGGTCAAGATCGAACGCGAACGACACCCGTACTGGTCGGG 951
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 CAACCATCTCGAACGGGAGGCGACCCGTCGATTCGAAGCAACAGGGCGCGAGTTTATGGA 1011
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 GCAAACGCTACTGCTAGCGAAACAGCGACGACCCCAAGCGGCCTGGGGTTACTATGCCTT 1071
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 TCCCTACTGCTTCAACATGAACGGTGCGGCTAGCACTCGCTCGGAAAACTGTTCACCGGA 1131
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 AGTGCAGCGAGAAAACAACCGCATCATGTGGCTGTTCGATGGATCGGACATCATCTTCCC 1191
consensus_3330#1 ------------------------------------------------------------
consensus_3330#0 ATCTGTCTATCTGCGGGAAAAGCTATCACCAAGCGAACGGGAGCAGCTAAT 1242
consensus_3330#1 ---------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||