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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 902 fasta sequence
[GGCAGAATTCGGCACGATGGCGGTGATCAGTGAACAGCAAACAGTGACCACAATCACAACACAGCACCAGCAAACAGCATCATAGACGAGTCACGATACTGGTAGTCGAGAAGTGCCCGGAATAAGTTTCGATCGAGTATCGGTGCAGTCCTGCCCGAGCAGGTACCGGAAGCTGGGCGGCGGACCAGGCTTGCTGCGAGGACGATCACAGTCCGTAANACAGGCCACTCGGATCAGATGCGCCAGTTGGATAGCGAAGCATCCGTACATCCGCCGCGTGACCGTCACGGGATGNCGTGCTAATCTGCTGCGCGTTACTGCGCCAGCGCAAGTTCTCCATCACCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGGNCAGACGTTCCCGCACTGGTTCCAGGGGCTGGANCCGTTCGAGAAGACGATNGTTGCGCTCGGCGGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCCAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGAACTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCATGCGACGGAGATGGTGTAGGTGGCCGGCGTGGTACTGAGTCGTGGACTGTTACGAAGNCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCCGAGATGCGCAAGCATTGGGCCGTACATCAGCCACCTGGCTGNCGAATCCGGTGCCGGGAAATTCACCGGTCATCCGGCTGCCGAAAGGGGTGGCCAGCANTCCAATCGGTGGATCTGCTGGTGTGGCCNTACGTCAGGCCCCAAAGCTGACAGCGATNNCGGGTTCGNATGTCCNACGAGNNAGCCAGTTTATCGAAGNNGGTAAAGGCNTACCTTA]
[+] EMBL BX468397 [GGCAGAATTCGGCACGATGGCGGTGATCAGTGAACAGCAAACAGTGACCACAATCACAACACAGCACCAGCAAACAGCATCATAGACGAGTCACGATACTGGTAGTCGAGAAGTGCCCGGAATAAGTTTCGATCGAGTATCGGTGCAGTCCTGCCCGAGCAGGTACCGGAAGCTGGGCGGCGGACCAGGCTTGCTGCGAGGACGATCACAGTCCGTAANACAGGCCACTCGGATCAGATGCGCCAGTTGGATAGCGAAGCATCCGTACATCCGCCGCGTGACCGTCACGGGATGNCGTGCTAATCTGCTGCGCGTTACTGCGCCAGCGCAAGTTCTCCATCACCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGGNCAGACGTTCCCGCACTGGTTCCAGGGGCTGGANCCGTTCGAGAAGACGATNGTTGCGCTCGGCGGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCCAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGAACTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCATGCGACGGAGATGGTGTAGGTGGCCGGCGTGGTACTGAGTCGTGGACTGTTACGAAGNCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCCGAGATGCGCAAGCATTGGGCCGTACATCAGCCACCTGGCTGNCGAATCCGGTGCCGGGAAATTCACCGGTCATCCGGCTGCCGAAAGGGGTGGCCAGCANTCCAATCGGTGGATCTGCTGGTGTGGCCNTACGTCAGGCCCCAAAGCTGACAGCGATNNCGGGTTCGNATGTCCNACGAGNNAGCCAGTTTATCGAAGNNGGTAAAGGCNTACCTTA]
consensusID : consensus_3338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[ATCGGCACGAGGGTGNATCGTGAACACAACAGGAACAACACAACACAGCACCAGCAACAGCATCATGACGGTCACGTACGGTGTCGAGAAGTGCCCGGAAAAGTTCGACGAGTATCGGTGCAGCCTGCCCGAGCAGTACCGGAAGCTGGCGGCGGACCAGCTGCGCGAGGACGATCACATCCGCAAGCAGGCCATCGATCAGATGCGCCAGTGGATAGCGAAGCATCCGTACATCCGCCGCTGCCGCACGGATGCCGTGTTTCTGCTGCGCTTTCTGCGCCAGCGCAAGTTCTCCATCCCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGCCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCCGTTCGAGAAGACGATGGTGGCGCTCGGCGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCAAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCTGCGACGAGATGGTGCAGGTGGCCGGCGTGGTACTGATCGTGGACTGTTACGAAGCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCGAGATGCGCAACATTGGGCCGTACATCAAGCACCTGCTGCCGATCCGCTGCCGGGAAAT]
[+] EMBL BX469419 [ATCGGCACGAGGGTGNATCGTGAACACAACAGGAACAACACAACACAGCACCAGCAACAGCATCATGACGGTCACGTACGGTGTCGAGAAGTGCCCGGAAAAGTTCGACGAGTATCGGTGCAGCCTGCCCGAGCAGTACCGGAAGCTGGCGGCGGACCAGCTGCGCGAGGACGATCACATCCGCAAGCAGGCCATCGATCAGATGCGCCAGTGGATAGCGAAGCATCCGTACATCCGCCGCTGCCGCACGGATGCCGTGTTTCTGCTGCGCTTTCTGCGCCAGCGCAAGTTCTCCATCCCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGCCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCCGTTCGAGAAGACGATGGTGGCGCTCGGCGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCAAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCTGCGACGAGATGGTGCAGGTGGCCGGCGTGGTACTGATCGTGGACTGTTACGAAGCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCGAGATGCGCAACATTGGGCCGTACATCAAGCACCTGCTGCCGATCCGCTGCCGGGAAAT]
[+] EMBL BM622963 [ ccgggaGGTG ATCGTGAACACAACAGGAACAACACAACACAGCACCAGCAACAGCATCATGACGGTCACGTACGGTGTCGAGAAGTGTCCGGAAAAGTTCGACGAGTATCGGTGCAGCCTGCCCGAGCAGTACCGGAAGCTGGCGGCGGACCAGCTGCGCGAGGACGATCACATCCGCAAGCAGGCCATCGATCAGATGCGCCAGTGGATAGCGAAGCATCCGTACATCCGCCGCTGCCGCACGGATGCCGTGTTTCTGCTGCGTTTTCTGCGCCAGCGCAAGTTCTCCATCCCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCCCTTCGCCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCCGTTCGAGAAGACGATGGTGGCGCTCGGCGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCAAGGGCCAGATCGTGATACTGATCAAGTCGCGCAACTTCCGCGTGGACAAGTACGACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCTGCGACGAGAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3338#0 GGCAGAATTCGGCACGATGGCGGTGATCAGTGAACAGCAAACAGTGACCACAATCACAAC 60
consensus_3338#1 -------ATCGGCACGAGGGTG--NATC-GTGAACA--CAACAGGAACAACA----CAAC 44
********* ** * *** ******* ***** ** *** ****
consensus_3338#0 ACAGCACCAGCAAACAGCATCATAGACGAGTCACGATACTGGTAGTCGAGAAGTGCCCGG 120
consensus_3338#1 ACAGCACCAGCAA-CAGCATCAT-GACG-GTCACG-TAC-GGT-GTCGAGAAGTGCCCGG 98
************* ********* **** ****** *** *** ****************
consensus_3338#0 AATAAGTTTCGATCGAGTATCGGTGCAGTCCTGCCCGAGCAGGTACCGGAAGCTGGGCGG 180
consensus_3338#1 AA--AAGTTCGA-CGAGTATCGGTGCAG-CCTGCCCGAGCAG-TACCGGAAGCTGG-CGG 152
** * ***** *************** ************* ************* ***
consensus_3338#0 CGGACCAGGCTTGCTGCGAGGACGATCACAGTCCGTAANACAGGCCACTCGGATCAGATG 240
consensus_3338#1 CGGACCAG--CTGC-GCGAGGACGATCACA-TCCGCAAG-CAGGCCATC--GATCAGATG 205
******** *** *************** **** ** ******* *********
consensus_3338#0 CGCCAGTTGGATAGCGAAGCATCCGTACATCCGCCGCGTGACCGTCACGGGATGNCGTGC 300
consensus_3338#1 CGCCAGT-GGATAGCGAAGCATCCGTACATCCGCCGC--TGCCG-CACGG-ATGCCGTGT 260
******* ***************************** *** ***** *** ****
consensus_3338#0 TAATCTGCTGCGCGTTACTGCGCCAGCGCAAGTTCTCCATCACCGAAGGCGTGCGAAATG 360
consensus_3338#1 T--TCTGCTGCGCTTT-CTGCGCCAGCGCAAGTTCTCCATC-CCGAAGGCGTGCGAAATG 316
* ********** ** ************************ ******************
consensus_3338#0 CTGGAACGATATCTAGCACTTCGGNCAGACGTTCCCGCACTGGTTCCAGGGGCTGGANCC 420
consensus_3338#1 CTGGAACGATATCTAGCACTTCG-CCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCC 375
*********************** ******************************** **
consensus_3338#0 GTTCGAGAAGACGATNGTTGCGCTCGGCGGAGGAGGAGGTGTTCCACGTGCTCGGATTCG 480
consensus_3338#1 GTTCGAGAAGACGATGGTGGCGCTCGGCG-AGGAGGAGGTGTTCCACGTGCTCGGATTCG 434
*************** ** ********** ******************************
consensus_3338#0 ACGCCCAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACG 540
consensus_3338#1 ACGCCAAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACG 494
***** ******************************************************
consensus_3338#0 AACTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCATGCGACGGA 600
consensus_3338#1 ACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCC-TGCGACG-A 552
* ************************************************ ******* *
consensus_3338#0 GATGGTGTAGGTGGCCGGCGTGGTACTGAGTCGTGGACTGTTACGAAGNCATCGATGGCA 660
consensus_3338#1 GATGGTGCAGGTGGCCGGCGTGGTACTGA-TCGTGGACTGTTACGAAGC-ATCGATGGCA 610
******* ********************* ****************** **********
consensus_3338#0 CACTTCACGCTGTTCCGGCTGAGCCGAGATGCGCAAGCATTGGGCCGTACATCAGCCACC 720
consensus_3338#1 CACTTCACGCTGTTCCGGCTGAGC-GAGATGCGCAA-CATTGGGCCGTACATCAAGCACC 668
************************ *********** ***************** ****
consensus_3338#0 TGGCTGNCGAATCCGGTGCCGGGAAATTCACCGGTCATCCGGCTGCCGAAAGGGGTGGCC 780
consensus_3338#1 TG-CTGCCGA-TCCGCTGCCGGGAAAT--------------------------------- 693
** *** *** **** ***********
consensus_3338#0 AGCANTCCAATCGGTGGATCTGCTGGTGTGGCCNTACGTCAGGCCCCAAAGCTGACAGCG 840
consensus_3338#1 ------------------------------------------------------------
consensus_3338#0 ATNNCGGGTTCGNATGTCCNACGAGNNAGCCAGTTTATCGAAGNNGGTAAAGGCNTACCT 900
consensus_3338#1 ------------------------------------------------------------
consensus_3338#0 TA 902
consensus_3338#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||