cluster # 3358

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Anopheles gambiae
cluster # 3358 cluster # 3358 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3358#0 length = 512 sequences # 2

consensus_3358#1 length = 434 sequences # 1

consensusID : consensus_3358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 512
fasta sequence

                              [GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAAGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGT]

[+] EMBL BX613379             [GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAAGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATA          ]
[+] EMBL BM644356             [                                                                                                           ccgGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACA  ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATATAAGTGCGCAGGAAACGCAAGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGT]




>consensus_3358#0
GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAA
AAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGC
ATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACC
AATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACA
ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAAC
GCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCA
AGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAG
TCAATAAAGAGGAAACATGATACACATTCTGT

consensusID : consensus_3358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [CCGACTTAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAGGTGGATGGGAGAGGGGGGTGGAGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGTACAGTT]

[+] EMBL BM621851             [CCGACTTAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAGGTGGATGGGAGAGGGGGGTGGAGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGTACAGTT]




>consensus_3358#1
CCGACTTAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGT
GGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAA
CACGAACCAACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATA
CAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTG
CAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAGGTGGATGGGAGAGGGGGGTGGAGGG
GTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACA
CATTCTGTACAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3358#0      GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAA 60
consensus_3358#1      ----------------------------------------------------CCGACTTA 8
                                                                           * *** *

consensus_3358#0      AAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGC 120
consensus_3358#1      AAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGTGGAAGTGC 68
                      ********************************************* **************

consensus_3358#0      ATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACC 180
consensus_3358#1      ATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACC 128
                      ************************************************************

consensus_3358#0      AATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACA 240
consensus_3358#1      AACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACA--- 185
                      ** ******************************************************   

consensus_3358#0      ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC 300
consensus_3358#1      -------------------------------CACACACACACACACACACACACACACAC 214
                                                     *****************************

consensus_3358#0      ACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAAC 360
consensus_3358#1      ACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAAC 274
                      ************************************************************

consensus_3358#0      GCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCA 420
consensus_3358#1      GCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCA 334
                      ************************************************************

consensus_3358#0      AGTGGATGGGAGAGGGGGT--GGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGA 478
consensus_3358#1      GGTGGATGGGAGAGGGGGGTGGAGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGA 394
                       *****************   * *************************************

consensus_3358#0      AGTCAATAAAGAGGAAACATGATACACATTCTGT------ 512
consensus_3358#1      AGTCAATAAAGAGGAAACATGATACACATTCTGTACAGTT 434
                      **********************************