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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1176 fasta sequence
[CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGACGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGTGCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGGGCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAACGGGTNTCGCACCGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCGTCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATTCGGTTGTCCAAGATTATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAGGGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGATGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGCGAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAGGTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAGACNGAAGGCGGGNCNGGCNTANGCAAACGGGNGGCGGNNCGCGANGAGGGAAGNCGCGCNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAGCAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAANNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGCNCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGATAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNTTTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATATTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGAGGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT]
[+] EMBL BX469265 [CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGACGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGTGCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGGGCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAACGGGTNTCGCACCGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCGTCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATTCGGTTGTCCAAGATTATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAGGGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGATGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGCGAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAGGTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAGACNGAAGGCGGGNCNGGCNTANGCAAACGGGNGGCGGNNCGCGANGAGGGAAGNCGCGCNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAGCAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAANNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGCNCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGATAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNTTTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATATTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGAGGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT]
consensusID : consensus_3365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence
[CCGCTGTACGTGTGTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCACACACCTCCGAATCTTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGATCGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAGAACGATAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAAGTGCTGCTGGA]
[+] EMBL BM621665 [CCGCTGTACGTGTGTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCACACACCTCCGAATCTTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGATCGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAGAACGATAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGC ]
[+] EMBL BM642365 [ ccgGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACTGTGGCCAGCAGCAACTTCCAGCGTAATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCTGCCAACGAATCCACACACCTCCGAATTTTTCCCTGTGTTTCGTACGGTTTTGTCTCGCTGGGATAGATTTTCACAACCCCTCAACATCGCTCATTTTCCGACACCTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGACGAAGATACGTACGGCGAAGAGAACGACAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAAGTGCTGCTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3365#0 CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGA 60
consensus_3365#1 ------------------------------------------------------------
consensus_3365#0 CGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGT 120
consensus_3365#1 ------------------------------------------------------------
consensus_3365#0 GCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGG 180
consensus_3365#1 -CCGCTGTACGTGT-GTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGA-- 56
* **** *** * * * ** * ** * * * **** ****** **
consensus_3365#0 GCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAA--CGGGTNTCGCAC 238
consensus_3365#1 -TAAACATCGGATTTTTCTCCAC-GGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTT 114
* * ***** * ** ** * ** ** ** * * * * * *
consensus_3365#0 CGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCG 298
consensus_3365#1 AGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCA-CACACCTCCGAATC 173
* * **** *** * * ** * ** * ** * ** ***
consensus_3365#0 TCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATT---CGGTTGTCCAAGAT 355
consensus_3365#1 TTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGAT 233
* * ** * * * ** ** * * * ** * ******
consensus_3365#0 TATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAG 415
consensus_3365#1 CGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGT---GCAGATGTGTTTCTTCAGCAA 290
* *** * * * * * * * * * * * **
consensus_3365#0 GGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGA 475
consensus_3365#1 GCCATGAGTTCAGTACATGCAAAA--ATAGAAAACAT-TTGCA--GGCTCTG----TTTG 341
* * * * * ** * * ***** ** * * *
consensus_3365#0 TGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGC 535
consensus_3365#1 TCCGGCGA-TGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGAC 400
* * * ** ** * ** * * * * * * * * * * * ** *
consensus_3365#0 GAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAG 595
consensus_3365#1 GATAATCT--ACGAC-TGCACATCGATTAGGATA-----CTAC-------CAAAGCTGGG 445
** ** * * * * ** * * ** * ** * *
consensus_3365#0 GTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAG 655
consensus_3365#1 CCTTCCGTCGGCGATTTGTGGTGAGT--GCAAATCGAAGG----TCGAAAACTTCCATCA 499
**** * * *** * * * *** * * * ** *
consensus_3365#0 ACNGAAGGCGGGNCNGGCNTANGCAA--ACGGGNGGCGGNNCGCGANGAGGGAAGNCGCG 713
consensus_3365#1 GTTC--CGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCT----ACTGCT 553
*** * ** ** *** * * * * * * *** * **
consensus_3365#0 CNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAG 773
consensus_3365#1 GGTGGCCGCCGCACAC--ACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAG 611
** ****** * ** *** * *** * ** * * * * * **
consensus_3365#0 CAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAA 833
consensus_3365#1 -AACGATAACGACGACGACGACGA---CGATGAGCAAGAGGAGGAGGAGGAGGACGTGAG 667
** * * * * * * * ** * *** *** * * *
consensus_3365#0 NNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGC 893
consensus_3365#1 TATCAAGCTCGAG-----CCGGAAGTGCTGCTGGA------------------------- 697
* * * * * ** * * * *
consensus_3365#0 NCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGA 953
consensus_3365#1 ------------------------------------------------------------
consensus_3365#0 TAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNT 1013
consensus_3365#1 ------------------------------------------------------------
consensus_3365#0 TTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATA 1073
consensus_3365#1 ------------------------------------------------------------
consensus_3365#0 TTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGA 1133
consensus_3365#1 ------------------------------------------------------------
consensus_3365#0 GGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT 1176
consensus_3365#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||