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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 979 fasta sequence
[CCGGAAGAAGTGTCTCACCTGCGGGCTGCACATCGAGCGGCGCACGACCGCCGCCGGCTGCCCGCTCGAGGGCTCGAAGGACGGCCGGCTGCTGTCCGCCGACCGGCTGCGCTACCTCGAGAGCAAGATCATGGAGATAGAGGAAACGCACTGCTGCAGCATCTGCATGGAGCGCCGGCGGAACGTCGCGTTCCTCTGCGGCCACAGCTCCTGCTCCAAGTGTGCGGAAACGCTCAAGATCTGCCACATGTGCCGGAAGCCGATCACGAAAAAGATTAATCTTTATTAGGAGCGGTTAGGGTGAAGCATAAAGGGTAATTTGCGCTTGCAAAAAAGCAACAAGATATAGAACAAGAACCATTATAGGCTAGAGAATCGAAAGGGCGAAAGGGAGAGAATGCTAATGTCAGCTAATTTGTAAGTGTTCACTATTTATTTCACAATTTCCTAAACAAAACCGACCCAGACTCACCCACACACACATATATACGCACACAGCGTCCCGTGCGTCTCGCAGCAAAACGTCCCAAAGCGTGTAGAGAGTGGAGCCGACCCTAAGTGTCGTCGCCCCCTTCAAACACTACTTCCTAAAGCCTAGTCCTGTTTCGTATTCTGTTTAAGGGAGAGGGTTGCGCGCGGGCGTCTAGTGTTTAAGTTCCCCGTCATCACCACCACCCCCCATATATCCGTCGTGTGTACCTCTCTCACCGTGTGTAAATAGAACGTTTTCGGTATGTGTGTTATATATAAATAGGTATATATATATAAATGTAAATGTAAAGTGTGTATGTGTTCAACGATAGAACAAATGGTTCCCCGATAGTCGAAAATGCACAGCGCATCAGCATGATCCTATAGTGTGTGTGAGAAGTGTATGTGTGTGTGGGTGTGGTTGATGTGATCGGTTTATCATTAACGACGCGTAAAGGGATGAATTGTTTATGGCACACGGAGCCCTGTTTGTTTTTTTGTTAGATAA]
[+] EMBL BM649711 [CCGGAAGAAGTGTCTCACCTGCGGGCTGCACATCGAGCGGCGCACGACCGCCGCCGGCTGCCCGCTCGAGGGCTCGAAGGACGGCCGGCTGCTGTCCGCCGACCGGCTGCGCTACCTCGAGAGCAAGATCATGGAGATAGAGGAAACGCACTGCTGCAGCATCTGCATGGAGCGCCGGCGGAACGTCGCGTTCCTCTGCGGCCACAGCTCCTGCTCCAAGTGTGCGGAAACGCTCAAGATCTGCCACATGTGCCGGAAGCCGATCACGAAAAAGATTAATCTTTATTAGGAGCGGTTAGGGTGAAGCATAAAGGGTAATTTGCGCTTGCAAAAAAGCAACAAGATATAGAACAAGAACCATTATAGGCTAGAGAATCGAAAGGGCGAAAGGGAGAGAATGCTAATGTCAGCTAATTTGTAAGTGTTCACTATTTATTTCACAATTTCCTAAACAAAACCGACCCAGACTCACCCACACACACATATATACGCACACAGCGTCCCGTGCGTCTCGCAGCAAAACGTCCCAAAGCGTGTAGAGAGTGGAGCCGACCCTAAGTGTCGTCGCCCCCTTCAAACACTACTTCCTAAAGCCTAGTCCTGTTTCGTATTCTGTTTAAGGGAGAGGGTTGCGCGCGGGCGTCTAGTGTTTAAGTTCCCCGT ]
[-] EMBL AGA281984 [ CCCTCCAAACACTACTTCCTAAAGCCTAGTCCTGTTTCGTATTCTGTTT AGGGAGAGGGTTGCGCGCGGGCGTCTAGCGTTT AGTTCCCGTTCATCACCACCACCCCCCATATATCCGTCGTGTGTACCTCTCTCACCGTGTGTAAATAGAACGTTTTCGGTATGTGTGTTATATATAAATAGGTATATATATATAAATGTAAATGTAAAGTGTGTATGTGTTCAACGATAGAACAAATGGTTCCCCGATAGTCGAAAATGCACAGCGCATCAGCATGATCCTATAGTGTGTGTGAGAAGTGTATGTGTGTGTGGGTGTGGTTGATGTGATCGGTTTATCATTAACGACGCGTAAAGGGATGAATTGTTTATGGCACACGGAGCCCTGTTTGTTTTTTTGTTAGATAA]
consensusID : consensus_3367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[TTTTTTTTCACAATTTCCTAAACAAAGGCGACCCAAACTCACCCACACACACATAAACGCACACAGCGCCCCATGCGTCTCGCAGCAAAACGTCCCAAAGCGTGTAGAGAGTAGGGCCGAATCTGAGCCCCTCCAAACACTACTTCCTAAAGCCTAGTCCTGTTTCGTATTCTGTTTAGGGAGAGGGTTGCGCGCGGGCGTCTAGCGTTTAGTTCCCGTTCATCACCACCACCCCCCATATATCCGTCGTGTGTACCTCTCTCACCGTGTGTAAATAGAACGTTTTCGGTATGTGTGTTATATATAAATAGGTATATATATATAAATGTAAATGTAAAGTGTGTATGTGTTCAACGATAGAACAAATGGTTCCCCGATAGTCGAAAATGCACAGCGCATCAGCATGATCCTATAGTGTGTGTGAGAAGTGTATGTGTGTGTGGGT]
[+] EMBL AGA280287 [TTTTTTTTCACAATTTCCTAAACAAAGGCGACCCAAACTCACCCACACACACATAAACGCACACAGCGCCCCATGCGTCTCGCAGCAAAACGTCCCAAAGCGTGTAGAGAGTAGGGCCGAATCTGAGCCCCTCCAAACACTACTTCCTAAAGCCTAGTCCTGTTTCGTATTCTGTTTAGGGAGAGGGTTGCGCGCGGGCGTCTAGCGTTTAGTTCCCGTTCATCACCACCACCCCCCATATATCCGTCGTGTGTACCTCTCTCACCGTGTGTAAATAGAACGTTTTCGGTATGTGTGTTATATATAAATAGGTATATATATATAAATGTAAATGTAAAGTGTGTATGTGTTCAACGATAGAACAAATGGTTCCCCGATAGTCGAAAATGCACAGCGCATCAGCATGATCCTATAGTGTGTGTGAGAAGTGTATGTGTGTGTGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3367#0 CCGGAAGAAGTGTCTCACCTGCGGGCTGCACATCGAGCGGCGCACGACCGCCGCCGGCTG 60
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 CCCGCTCGAGGGCTCGAAGGACGGCCGGCTGCTGTCCGCCGACCGGCTGCGCTACCTCGA 120
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 GAGCAAGATCATGGAGATAGAGGAAACGCACTGCTGCAGCATCTGCATGGAGCGCCGGCG 180
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 GAACGTCGCGTTCCTCTGCGGCCACAGCTCCTGCTCCAAGTGTGCGGAAACGCTCAAGAT 240
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 CTGCCACATGTGCCGGAAGCCGATCACGAAAAAGATTAATCTTTATTAGGAGCGGTTAGG 300
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 GTGAAGCATAAAGGGTAATTTGCGCTTGCAAAAAAGCAACAAGATATAGAACAAGAACCA 360
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 TTATAGGCTAGAGAATCGAAAGGGCGAAAGGGAGAGAATGCTAATGTCAGCTAATTTGTA 420
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 AGTGTTCACTATTTATTTCACAATTTCCTAAACAAAACCGACCCAGACTCACCCACACAC 480
consensus_3367#1 ----------TTTTTTTTCACAATTTCCTAAACAAAGGCGACCCAAACTCACCCACACAC 50
*** ********************* ******* **************
consensus_3367#0 ACATATATACGCACACAGCGTCCCGTGCGTCTCGCAGCAAAACGTCCCAAAGCGTGTAGA 540
consensus_3367#1 ACATAAA--CGCACACAGCGCCCCATGCGTCTCGCAGCAAAACGTCCCAAAGCGTGTAGA 108
***** * *********** *** ***********************************
consensus_3367#0 GAGTGGAGCCGACCCTAAGTGTCGTCGCCCCCTTCAAACACTACTTCCTAAAGCCTAGTC 600
consensus_3367#1 GAGTAGGGCCGAATCTGAG---------CCCCTCCAAACACTACTTCCTAAAGCCTAGTC 159
**** * ***** ** ** ***** **************************
consensus_3367#0 CTGTTTCGTATTCTGTTTAAGGGAGAGGGTTGCGCGCGGGCGTCTAGTGTTTAAGTTCCC 660
consensus_3367#1 CTGTTTCGTATTCTGTTTA-GGGAGAGGGTTGCGCGCGGGCGTCTAGCGTTTA-GTTCCC 217
******************* *************************** ***** ******
consensus_3367#0 CGTCATCACCACCACCCCCCATATATCCGTCGTGTGTACCTCTCTCACCGTGTGTAAATA 720
consensus_3367#1 GTTCATCACCACCACCCCCCATATATCCGTCGTGTGTACCTCTCTCACCGTGTGTAAATA 277
**********************************************************
consensus_3367#0 GAACGTTTTCGGTATGTGTGTTATATATAAATAGGTATATATATATAAATGTAAATGTAA 780
consensus_3367#1 GAACGTTTTCGGTATGTGTGTTATATATAAATAGGTATATATATATAAATGTAAATGTAA 337
************************************************************
consensus_3367#0 AGTGTGTATGTGTTCAACGATAGAACAAATGGTTCCCCGATAGTCGAAAATGCACAGCGC 840
consensus_3367#1 AGTGTGTATGTGTTCAACGATAGAACAAATGGTTCCCCGATAGTCGAAAATGCACAGCGC 397
************************************************************
consensus_3367#0 ATCAGCATGATCCTATAGTGTGTGTGAGAAGTGTATGTGTGTGTGGGTGTGGTTGATGTG 900
consensus_3367#1 ATCAGCATGATCCTATAGTGTGTGTGAGAAGTGTATGTGTGTGTGGGT------------ 445
************************************************
consensus_3367#0 ATCGGTTTATCATTAACGACGCGTAAAGGGATGAATTGTTTATGGCACACGGAGCCCTGT 960
consensus_3367#1 ------------------------------------------------------------
consensus_3367#0 TTGTTTTTTTGTTAGATAA 979
consensus_3367#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||