cluster # 3376

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Anopheles gambiae
cluster # 3376 cluster # 3376 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3376#0 length = 647 sequences # 2

consensus_3376#1 length = 359 sequences # 1

consensusID : consensus_3376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [CGTCATTGTTGGGAAACAGTAGATCTACGCTCAAACCCGCCCGCTTCAGACGAGCTTCAATACCTTCCGCATGTGGGGTTAGCTCCTTGTTCACCACTATGATTTCACAATCATTGCTTTCTATTCCTCGATGTGGTGCCTGCCCGATCGGGGTCTCCGGATACACGCTACTTAAATCGGCAACACTGTATTGCTGTGGATGGTATCCACGTTTGATCGGATGGATCGGATCCACGGGCGAACGGTCGCGGGCAGCGGCACCCGACGCGTTTGACTTGGCATTCGAAGCTGCTGTACTACCCCGCGGTAGCAATCCCTTCTTTGCGCGATTGTCGTTGGCCACCTTTACCATCAGTTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGACGCAGGAGGACACACAATATCCGCTTTAATTTTGCTGTAACAGAAGAAA]

[+] EMBL AGA282072            [CGTCATTGTTGGGAAACAGTAGATCTACGCTCAAACCCGCCCGCTTCAGACGAGCTTCAATACCTTCCGCATGTGGGGTTAGCTCCTTGTTCACCACTATGATTTCACAATCATTGCTTTCTATTCCTCGATGTGGTGCCTGCCCGATCGGGGTCTCCGGATACACGCTACTTAAATCGGCAACACTGTATTGCTGTGGATGGTATCCACGTTTGATCGGATGGATCGGATCCACGGGCGAACGGTCGCGGGCAGCGGCACCCGACGCGTTTGACTTGGCATTCGAAGCTGCTGTACTACCCCGCGGTAGCAATCCCTTCTTTGCGCGATTGTCGTTGGCCACCTTTACCATCAGTTTTCGACCGTTGAACAGCTTGCCGT                                                                                                                                                                                                                                                                          ]
[-] EMBL AGA280371            [                                                                                                                                                                                                                                                                                 ACTTGGCAATAGAAGATGCTGTACTACCCCGCGGTAGCAATCCCTTCTATGCGCGATTGTCGTTAGCCACCTTTACCATCAGTTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGACGCAGGAGGACACACAATATCCGCTTTAATTTTGCTGTAACAGAAGAAA]




>consensus_3376#0
CGTCATTGTTGGGAAACAGTAGATCTACGCTCAAACCCGCCCGCTTCAGACGAGCTTCAA
TACCTTCCGCATGTGGGGTTAGCTCCTTGTTCACCACTATGATTTCACAATCATTGCTTT
CTATTCCTCGATGTGGTGCCTGCCCGATCGGGGTCTCCGGATACACGCTACTTAAATCGG
CAACACTGTATTGCTGTGGATGGTATCCACGTTTGATCGGATGGATCGGATCCACGGGCG
AACGGTCGCGGGCAGCGGCACCCGACGCGTTTGACTTGGCATTCGAAGCTGCTGTACTAC
CCCGCGGTAGCAATCCCTTCTTTGCGCGATTGTCGTTGGCCACCTTTACCATCAGTTTTC
GACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAAT
GAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTT
TGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTC
TGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGACG
CAGGAGGACACACAATATCCGCTTTAATTTTGCTGTAACAGAAGAAA

consensusID : consensus_3376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [TGTACTACCCCCGCGGTAGCAATCCCTGTCTTTGGCGCGATTGTCGTTGGCCACCTTTACCAGTCAGTCTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGAACGCAGGAGGACAACAATATCCGCTTAATTTACACTCGTCGCGATTCT]

[-] EMBL BX469077             [TGTACTACCCCCGCGGTAGCAATCCCTGTCTTTGGCGCGATTGTCGTTGGCCACCTTTACCAGTCAGTCTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTGGGAACGCAGGAGGACAACAATATCCGCTTAATTTACACTCGTCGCGATTCT]




>consensus_3376#1
TGTACTACCCCCGCGGTAGCAATCCCTGTCTTTGGCGCGATTGTCGTTGGCCACCTTTAC
CAGTCAGTCTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCT
GCCTTTTCGGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTAT
GGCTGAAAATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCG
CCAACGTACACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATA
TTTGTCTGGGAACGCAGGAGGACAACAATATCCGCTTAATTTACACTCGTCGCGATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3376#0      CGTCATTGTTGGGAAACAGTAGATCTACGCTCAAACCCGCCCGCTTCAGACGAGCTTCAA 60
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      TACCTTCCGCATGTGGGGTTAGCTCCTTGTTCACCACTATGATTTCACAATCATTGCTTT 120
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      CTATTCCTCGATGTGGTGCCTGCCCGATCGGGGTCTCCGGATACACGCTACTTAAATCGG 180
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      CAACACTGTATTGCTGTGGATGGTATCCACGTTTGATCGGATGGATCGGATCCACGGGCG 240
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      AACGGTCGCGGGCAGCGGCACCCGACGCGTTTGACTTGGCATTCGAAGCTGCTGTACTAC 300
consensus_3376#1      ----------------------------------------------------TGTACTAC 8
                                                                          ********

consensus_3376#0      CCC-GCGGTAGCAATCCCT-TCTTTG-CGCGATTGTCGTTGGCCACCTTTACCA-TCAGT 356
consensus_3376#1      CCCCGCGGTAGCAATCCCTGTCTTTGGCGCGATTGTCGTTGGCCACCTTTACCAGTCAGT 68
                      *** *************** ****** *************************** *****

consensus_3376#0      -TTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTC 415
consensus_3376#1      CTTTCGACCGTTGAACAGCTTGCCGTTCATCGCCTTGATGGCAGCAGAAGCTGCCTTTTC 128
                       ***********************************************************

consensus_3376#0      GGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAA 475
consensus_3376#1      GGAATGAAACTGTATGAACCCGAATCCGCGCAGAAGCGTCAAGTCTTGGTATGGCTGAAA 188
                      ************************************************************

consensus_3376#0      ATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTA 535
consensus_3376#1      ATCTTTGAACAACTCTTCGAACTCCTCCACTTTCGCTTGTTCTCCCAATCCGCCAACGTA 248
                      ************************************************************

consensus_3376#0      CACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTG 595
consensus_3376#1      CACTCTGGAATTGACCGGAGGAATATTTGCCATAACGTACACCGTGTAAATATTTGTCTG 308
                      ************************************************************

consensus_3376#0      GGA-CGCAGGAGGACACACAATATCCGCTTTAATTTTGCT-GTAACAGAAGAAA 647
consensus_3376#1      GGAACGCAGGAGGACA-ACAATATCCGCTTAATTTACACTCGTCGCGATTCT-- 359
                      *** ************ ************* * **   ** **  *