cluster # 3378

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Anopheles gambiae
cluster # 3378 cluster # 3378 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3378#0 length = 789 sequences # 2

consensus_3378#1 length = 632 sequences # 1

consensusID : consensus_3378#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 789
fasta sequence

                              [CCGGCGGTCATACCGCCGTCGCTCAAGTCGCAGCTGACCGTTACGCCTGCCGGTGCCGTAACCAACACGAACACCACCACCACCATCAACAACAACAGCATCCACAACGTGAACGCGAATGGCGGTGGCGGCGGGCTGGTGGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAGACGCTGAAGGAGCTGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCAGCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGTGGTGGCGGCGGTGCTGGTAGCGGATCATCACACCCGTAGCCCACCCGTAGTCCGTTCCGGTTGCTCCGGAACCGATTCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTTGCAAGTGTGTCCTCCCACCGTGGGGAAGGTTAGCAGTTACCATTCATGGCATCATGGTGGGGCGCCGTCGGCGCCTGTTTTGGAAAAGGGAAAGTTTAGCGCGGGGGAGGTAAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGCCACCTTTTCACCAACAAAACAGGCGAAGCGTGGTCAATCCACGCGTCTCTTCAACAACCACAGTTTGTACATAGAAGGGAAGGTTCTGAGGGCATTTAGGTAGACAGAGGACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTG]

[+] EMBL BM632690             [CCGGCGGTCATACCGCCGTCGCTCAAGTCGCAGCTGACCGTTACGCCTGCCGGTGCCGTAACCAACACGAACACCACCACCACCATCAACAACAACAGCATCCACAACGTGAACGCGAATGGCGGTGGCGGCGGGCTGGTGGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAGACGCTGAAGGAGCTGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCAGCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGTGGTGGCGGCGGTGCTGGTAGCGGATCATCACACCCGTAGCCCACCCGTAGTCCGTTCCGGTTGCTCCGGAACCGATTCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTTGCAAGTGTGTCCTCCCACCGTGGGGAAGGTTAGCAGTTACCATTCATGGCATCATGGTGGGGCGCCGTCGGCGCCTGTTTTGGAAAAGGGAAAGTTTAGCGCGGGGGAGGTAAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGCCACCTTTTCACCAACAAAACAGGCGAAGCGT                                                                                                                                                                                       ]
[+] EMBL BX623331             [                                                                                                                                            GGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAGACGCTGAAGGAGCTGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCAGCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGTGGTGGCGGCGGTGATGGTAGCGGATCATCACACCCGTACCCCACCCGTAGTCCGTGCCGGTTGTTCCGGAACCGAATCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTTGCAAGTGTGTCCTCCCACCATGGGGAAGGTTAGCAGTTACCATTCATGGCATCAT GTGGGGCGCCGTCGGCGCCTGTTTTGGAAAGGGGAAAGTTTAGCGCGGGGGAGGTAAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGCCACCTTTTCACCAGCAAAACAGGCGAGGCGAGGTCAATCCACGCGTCTCTTCAACAACCACAGTTTGTACATAGAAGGGAAGGTTCTGAGGGCATTTAGGTAGACAGAGGACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTG]




>consensus_3378#0
CCGGCGGTCATACCGCCGTCGCTCAAGTCGCAGCTGACCGTTACGCCTGCCGGTGCCGTA
ACCAACACGAACACCACCACCACCATCAACAACAACAGCATCCACAACGTGAACGCGAAT
GGCGGTGGCGGCGGGCTGGTGGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAG
ACGCTGAAGGAGCTGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCAG
CAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGTG
GTGGCGGCGGTGCTGGTAGCGGATCATCACACCCGTAGCCCACCCGTAGTCCGTTCCGGT
TGCTCCGGAACCGATTCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTTG
CAAGTGTGTCCTCCCACCGTGGGGAAGGTTAGCAGTTACCATTCATGGCATCATGGTGGG
GCGCCGTCGGCGCCTGTTTTGGAAAAGGGAAAGTTTAGCGCGGGGGAGGTAAATACGTTA
GTGTAAAATAAAAGTAGAAGGAACATTCCATTTGCCACCTTTTCACCAACAAAACAGGCG
AAGCGTGGTCAATCCACGCGTCTCTTCAACAACCACAGTTTGTACATAGAAGGGAAGGTT
CTGAGGGCATTTAGGTAGACAGAGGACACACACTGGAAGAACGCCATGACACAGGACACA
CAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACT
TTCTAACTG

consensusID : consensus_3378#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [CCGGTTGGTCAGTACAGAGAGAGAGAGAGATAGAAAGAGAGCTAGTGAGGAAAGGACACAAATAGTCGCCAAAATAGTGTGGTGGGGTAAGCGGTTGGAAGCGAAAGTCAACACGGCGGAAGTAACTATAATACAAATAGCAGCAGCAGCAAGCATTATGTATAGTTAAGTAAGTACGTTAAGCTTAAGGCATTTGGGATTTCTATCGGATGTGTGTTTGTTTGTGTGTACGCATATTGTTTGTGTCTTGTTAGAACAAACACATTTACAGACACAGACACAGACAACTGCAATTTCGGCTAGGTGTAATATTCAACAGGTGTGTGGTTGAAAACAGTGTTGTGCAATCAACACACAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGTAGGAAAAGTAGGGCTTATAGTAAAAAAGAAAGTCAATACACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTGATAAAAGGGATACGGGGGGCGAATAGTAAATTTAGCTGGTTGGTCAGTACAGAGAAGAGAGAGAGAGAGCGAGAAAGAGAGTAAAGTTAAATTATTCAACTG]

[+] EMBL BM620879             [CCGGTTGGTCAGTACAGAGAGAGAGAGAGATAGAAAGAGAGCTAGTGAGGAAAGGACACAAATAGTCGCCAAAATAGTGTGGTGGGGTAAGCGGTTGGAAGCGAAAGTCAACACGGCGGAAGTAACTATAATACAAATAGCAGCAGCAGCAAGCATTATGTATAGTTAAGTAAGTACGTTAAGCTTAAGGCATTTGGGATTTCTATCGGATGTGTGTTTGTTTGTGTGTACGCATATTGTTTGTGTCTTGTTAGAACAAACACATTTACAGACACAGACACAGACAACTGCAATTTCGGCTAGGTGTAATATTCAACAGGTGTGTGGTTGAAAACAGTGTTGTGCAATCAACACACAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGTAGGAAAAGTAGGGCTTATAGTAAAAAAGAAAGTCAATACACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTGATAAAAGGGATACGGGGGGCGAATAGTAAATTTAGCTGGTTGGTCAGTACAGAGAAGAGAGAGAGAGAGCGAGAAAGAGAGTAAAGTTAAATTATTCAACTG]




>consensus_3378#1
CCGGTTGGTCAGTACAGAGAGAGAGAGAGATAGAAAGAGAGCTAGTGAGGAAAGGACACA
AATAGTCGCCAAAATAGTGTGGTGGGGTAAGCGGTTGGAAGCGAAAGTCAACACGGCGGA
AGTAACTATAATACAAATAGCAGCAGCAGCAAGCATTATGTATAGTTAAGTAAGTACGTT
AAGCTTAAGGCATTTGGGATTTCTATCGGATGTGTGTTTGTTTGTGTGTACGCATATTGT
TTGTGTCTTGTTAGAACAAACACATTTACAGACACAGACACAGACAACTGCAATTTCGGC
TAGGTGTAATATTCAACAGGTGTGTGGTTGAAAACAGTGTTGTGCAATCAACACACAGAG
AAAGAGAGAGAGAGAGAGAGAGAAAGTAGGAAAAGTAGGGCTTATAGTAAAAAAGAAAGT
CAATACACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGA
TACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTGATAAAAGGGA
TACGGGGGGCGAATAGTAAATTTAGCTGGTTGGTCAGTACAGAGAAGAGAGAGAGAGAGC
GAGAAAGAGAGTAAAGTTAAATTATTCAACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3378#0      CCGGCGGTCATACCGCCGTCGCTCAAGTCGCAGCTGACCGTTACGCCTGCCGGTGCCGTA 60
consensus_3378#1      ------------------------------------------------------------
                                                                                  

consensus_3378#0      ACCAACACGAACACCACCACCACCATCAACAACAACAGCATCCACAACGTGAACGCGAAT 120
consensus_3378#1      ------------------------------------------------------------
                                                                                  

consensus_3378#0      GGCGGTGGCGGCGGGCTGGTGGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAG 180
consensus_3378#1      ---------------CCGGTTGGTCAG-TACAGAGAGAGAGAGAGATAGAAAGAGAGCTA 44
                                     * *** *   ** * ** *  **     **  * *    ** *  

consensus_3378#0      ACGCTGAAGGAGC-TGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCA 239
consensus_3378#1      GTGAGGAAAGGACACAAATAGTCGCCAAAATAGTGTGGTGGGGTAAGCGGTTGGAAGCGA 104
                        *  *** *  *          ***  ** *  ***  *    *       *  * * *

consensus_3378#0      GCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGT 299
consensus_3378#1      AAGTCAACACGGCGGAAGTAACTATAATA-CAAATAGCAGCAGCAGCAAGCATTATGTAT 163
                          ** **    *  *   * *    ** *     ** * ** ** **  **      *

consensus_3378#0      GGTGGCGGCGGTGCTGGTAGCGGATCATCACACCCGTAGCCCACCCGTAGTCCGTTCCGG 359
consensus_3378#1      AGTTAAGTAAGTACGTTAAGC---TTAAGGCATTTGGGATTTCTATCGGATGTGTGTTTG 220
                       **   *   ** *    ***   * *   **   *              *  **    *

consensus_3378#0      TTGCTCCGGAACCGATTCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTT 419
consensus_3378#1      TTTGTGTGTACGC-ATATTGTTTGTGTCTTGTTAGAACAAACACATTTACAGACACAGAC 279
                      **  *  * *  * **   * * * **  **** *         *   *    *** *  

consensus_3378#0      GCAAGTGTGTCCTCCCACCGTGGGGAAGGTTAGCAGTTACCATTCATGGCATC----ATG 475
consensus_3378#1      ACAGACAA---CTGCAATTTCGGCTAGGTGTAATATTCAACAGGTGTGTGGTTGAAAACA 336
                       **        ** * *    **  * *  **  * * * **    **   *     *  

consensus_3378#0      GTGGGGCGCCGTCGGCGCCTGTTTTGGAAAAGGGAAAGTTT-----AGCGCGGGGGAGGT 530
consensus_3378#1      GTGTTGTGCAATCAACACACAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGTAGGAAAAGT 396
                      ***  * **  **  * *          * ** ** **        *  *  **  * **

consensus_3378#0      AAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGC-CACCTTTTCACCAA 589
consensus_3378#1      AGGGCTTATAGTAAAAAAGAAAGTCAATACACACACACTGGAAGAACGCCATGACACAGG 456
                      *       ****  **** ***   *  *   ***  *     *  * ** *  ***   

consensus_3378#0      CAAAACAGGCG-AAGCGTGGTCAATCCACGCGTCTCTTCAACAACCA-CAGTTTGTACAT 647
consensus_3378#1      ACACACAAACACAAGAGATGGAGATAC-TGTGGCGAGGTATTAGCTATCCGTTTG----- 510
                        * ***  *  *** *  *   ** *  * * *     *  * * * * *****     

consensus_3378#0      AGAAGGGAAGGTTCTGAGGGCATTTAGGTAGACAGAGGACACACACTGGAAGAACGCCAT 707
consensus_3378#1      GTAATTTAACTTTCTAACTGATAAAAGGGATACGGGGGGCGAATAGTAAATTTAGCTGGT 570
                        **   **  **** *  *     *** * ** * ** *  * * *  *   *     *

consensus_3378#0      GACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTT 767
consensus_3378#1      TGGTCAGTACAGAGAAGAGAGAGAGAGAGCGAGAAAGAGAGTAAAGTTAAATTATTCAAC 630
                          *** *** * **     *****  * ** *  * *   *    * *  *** *   

consensus_3378#0      TGGTAATTTAACTTTCTAACTG 789
consensus_3378#1      TG-------------------- 632
                      **