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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 927 fasta sequence
[CCGAATTATTTTTCTACACAAACTCAATGTGTATAAGAGAGTTAGTTAGTTTAGAGAAGAAAAAAAAAAGATTAGATTTTACGTTTTTTTCCCCACGTATCCTTGTTGCCTTGTTTTTGCGCTTACAGCAACAGCGCCTTGTGGCTTGTGGGGATGTTGGTGACACTGTTGTGTTTTCGTTGACGAATTATTAGTAGGAAATGACGAGAATGTTTCGGATAGTGTTTAATGCTAATGAACAGGAGAGGAATATGAAGATTGCGGAAAGGGCCACCGTTTACTTACACTTGCTTCCGATTTTTTCGATTTTTTGTTTTGTGTGCGCCACACTGCTGCAACTGGTTGTGTTTTACACATATATATTATATATGCGCCTTACGGGAGGAAGGATGCGCCGCCAAATCCGGCTTATACTTAGATAGCGTTGCGATGAACGAACGAACAAACGAACGAACAAAAACTAAAAGAACAAAATGTGTGTGTTGACTGTGCGGATTTGTAGTTTAGTTGTCTCTCATCCCTTAGAAAGCGAAGGATACGTGTGTGCGTGTAGAGCTGTAGAGAGAGCTGAGGGAAGAGAAGAACTCTGTTCTGGTTATAACTTACTTTAATTATTGTCGCTTATACAAATCAAAAGGCTCCATTTTAGAAGTCCCCGTCGCGAGTGGAGTGTGGTGAATGTGAAATGGAATTTAAAATTCTCAACATACACACACCCCATCATCCCGTTTTTGTGAGAACCATTATGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGNGGGTTACTGATACTACGAATGCTGTACNAAAATGTATGATGAATA]
[+] EMBL BM620752 [CCGAATTATTTTTCTACACAAACTCAATGTGTATAAGAGAGTTAGTTAGTTTAGAGAAGAAAAAAAAAAGATTAGATTTTACGTTTTTTTCCCCACGTATCCTTGTTGCCTTGTTTTTGCGCTTACAGCAACAGCG ]
[+] EMBL BX625942 [ CCCATGTAACCTTGTTGCCTTGTTTTTGCGCTTACAGCAACAGCGCCTTGTGGCTTGTGGGGATGTTGGTGACACTGTTGTGTTTTCGTTGACGAATTATTAGTAGGAAATGACGAGAATGTTTCGGATAGTGTTTAATGCTAATGAACAGGAGAGGAATATGAAGATTGCGGAAAGGGCCACCGTTTACTTACACTTGCTTCCGATTTTTTCGATTTTTTGTTTTGTGTGCGCCACACTGCTGCAACTGGTTGTGTTTTACACATATATATTATATATGCGCCTTACGGGAGGAAGGATGCGCCGCCAAATCCGGCTTATACTTAGATAGCGTTGCGATGAACGAACGAACAAACGAACGAACAAAAACTAAAAGAACAAAATGTGTGTGTTGACTGTGCGGATTTGTAGTTTAGTTGTCTCTCATCCCTTAGAAAGCGAAGGATACGTGTGTGCGTGTAGAGCTGTAGAGAGAGCTGAGGGAAGAGAAGAACTCTGTTCTGGTTATAACTTACTTTAATTATTGTCGCTTATACAAATCAAAAGGCTCCATTTTAGAAGTCCCCGTCGCGAGTGGAGTGTGGTGAATGTGAAATGGAATTTAAAATTCTCAACATACACACACCCCATCATCCCGTTTTTGTGAGAACCATTATGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGNGGGTTACTGATACTACGAATGCTGTACNAAAATGTATGATGAATA]
consensusID : consensus_3382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence
[CTTTTGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGTGGGTTACTGAAAAACTACTCACCGACAAACACACACACATACAGAGAGAGGAGACAGACAGCAAGTTCCCTTTGAAGAAGAAAAAGAAAAACCTGCCCAAATAAAACTCGATGGTACAATGTTAATGAAAGCGTCAGATTTTTAGCATTAAAAACAAATGTACACTTGTATTAACACTTTGATTAAGGTGAAGGTGCGTTAGGGATATGAGGCCGTAGAGCAGCTGCTCAGCCAGGCAATAGTACACTGCACGTATATAGGGCTAATGTATCTATGTTAAATGAATTCCCCGCCTCCTGGCAAATGACCTTTTGTACGTGGAGGGGGGGAAGCCACGATGTGATTATTGTGTGCAACTAGGGAACTCGGCCCTGCACTCGGACCACGTGTTTCGGGTCGGGTCGGGCCGGGTGTGTGTCTCTATCATCCTGACTCTTGCATTTCTCACCCCCCTCCCAGGAGGGGAAAGAATACTTGTTGTGTTATTATATTACGGCTATAAGTGGATAAGCAAAATCCGGAAAACGAATAGATCAATTCCTGTCCTGTGTATGTTTTTTTCCCTCCTCCATTGTAGATGTATACTCGTCGTGATGGGAGTGAAAAAGCTCTATTAAATATTACAACAAAACCCCAAAAATTGCAGAGAACCAGAGACAAGAATG]
[+] EMBL BX613605 [CTTTTGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGTGGGTTACTGAAAAACTACTCACCGACAAACACACACACATACAGAGAGAGGAGACAGACAGCAAGTTCCCTTTGAAGAAGAAAAAGAAAAACCTGCCCAAATAAAACTCGATGGTACAATGTTAATGAAAGCGTCAGATTTTTAGCATTAAAAACAAATGTACACTTGTATTAACACTTTGATTAAGGTGAAGGTGCGTTAGGGATATGAGGCCGTAGAGCAGCTGCTCAGCCAGGCAATAGTACACTGCACGTATATAGGGCTAATGTATCTATGTTAAATGAATTCCCCGCCTCCTGGCAAATGACCTTTTGTACGTGGAGGGGGGGAAGCCACGATGTGATTATTGTGTGCAACTAGGGAACTCGGCCCTGCACTCGGACCACGTGTTTCGGGTCGGGTCGGGCCGGGTGTGTGTCTCTATCATCCTGACTCTTGCATTTCTCACCCCCCTCCCAGGAGGGGAAAGAATACTTGTTGTGTTATTATATTACGGCTATAAGTGGATAAGCAAAATCCGGAAAACGAATAGATCAATTCCTGTCCTGTGTATGTTTTTTTCCCTCCTCCATTGTAGATGTATACTCGTCGTGATGGGAGTGAAAAAGCTCTATTAAATATTACAACAAAACCCCAAAAATTGCAGAGAACCAGAGACAAGAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3382#0 CCGAATTATTTTTCTACACAAACTCAATGTGTATAAGAGAGTTA-GTTAGTTTAGAGAAG 59
consensus_3382#1 -------CTTTTGTTGCA-ATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTAT 52
**** * ** * * * * * * ******* * * * ** * *
consensus_3382#0 AAAAAAAAAAGATTAGATTTTACGTTTTTTTCCCCACGTATCCTTGTTGCCTTGTTTTTG 119
consensus_3382#1 ACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACAC-TTTTTGGTGATAAAATTTTG 111
* ** ** ************* ** * *** ** *****
consensus_3382#0 CGCTTACAGCAACAGCGCCTTGTGGCTTGTGGGGATGTTGGTGACACTGTTGTGTTTTCG 179
consensus_3382#1 AACATTTATATTTTTAGTCTCGCT-CTTGTGGGT-TACTGA-AAAACTAC----TCACCG 164
* * * * ** * ******** * ** * *** * **
consensus_3382#0 TTGACGAATTATTAGTAGGAAATGACGAGAATGTTTCGGATAGTGTTTAATGCTAATGAA 239
consensus_3382#1 ACAAACACACACACATACAGAGAGAGGAGACAG--ACAGCAAGTTCCCTTTGAAGAAGAA 222
* * * ** * ** **** * * * *** ** * ***
consensus_3382#0 CAGGAGAGGAATATGAAGATTGCGGAAAGGGCCACCGTTTACTTACACTTGCTTCCGATT 299
consensus_3382#1 AAAGAAAAACCTGCCCAAATAAAACTCGATGGTACAATGT--TAATGAAAGCGTCAGATT 280
* ** * * * ** * ** * * * * ** ** ****
consensus_3382#0 TTTTCGATTTTTTGTTTTGTGTGCGCC-ACACTGCTGCAACTGGTTGTGTTTTACACATA 358
consensus_3382#1 TTTAGCATTAAAAACAA-ATGTACACTTGTATTAACACT-TTGATTAAGGTGAAGGTGCG 338
*** *** *** * * * * * ** ** * * *
consensus_3382#0 TATATTATATATGCGCCTTACGGGAGGAAGGATGCGCCGCCAAATCCGGCTTATACTTAG 418
consensus_3382#1 TTAGGGATATGAG-GCCGTA-GAGCAGCTGCTCAGCCAGGCAATAGTACACTGCACGTAT 396
* **** * *** ** * * * * * * *** * ** **
consensus_3382#0 ATAGCGTTGCGATGAACGAACGAACAAACGAACGAACAAAAACTAAAAGAACAAAATGT- 477
consensus_3382#1 ATAGGGCT--AATGTATCTATGT-TAAATGAATTCCCCGCCTCCTGGCAAATGACCTTTT 453
**** * * *** * * * *** *** * * ** * * *
consensus_3382#0 GTGTGTTGACTGTGCGGATTTGTAGTTTAGTTGTCTCTCATCCCTTAGAAAGCGAAGGAT 537
consensus_3382#1 GTACGTGGAGGGGGGGAAGCCACGATGTGATTATTGTGTGCAACTAGGGAACTC--GGCC 511
** ** ** * * * * * * ** * ** * ** **
consensus_3382#0 ACGTGTGTGCGTGTAGAGCTGTAGAGAGAGCTGAGGGAAGAGAAGAACTCTGTTCTGGTT 597
consensus_3382#1 CTGCACTCGGACCACGTGTTTCGGGTCGGGTCGGGCCGGGTGTGTGTCTCTATCATCCTG 571
* * * * * * * * * * * * **** * * *
consensus_3382#0 ATAACTTACTTTAATTATTGTCGCTTATACAAATCAAAAGGCTCCATTTTAGAAGTCCCC 657
consensus_3382#1 ACT-CTTGCATTTCTCACC-CCCCTCCCAGGAGGGGAAAGAATACTTGTTGTGTTATTAT 629
* *** * ** * * * ** * * **** * * * **
consensus_3382#0 GTCGCGAGTGGAGTGTGGTGAATGTGAAATGGAATTTAAAATTCTCAACATACACACACC 717
consensus_3382#1 ATTACGGCTATAAGTGGATAAGCAAAATCCGGAAAACGAA----TAGATCAATTCCTGTC 685
* ** * * * * * * **** ** * * * * *
consensus_3382#0 CCATCATCCCGTTTTTGTGAGAACCATTATGTTGCAATGTTTAGT-ATTAAGAAGAGAGG 776
consensus_3382#1 CTGTGTATGTTTTTTTCCCTCCTCCATTGTA----GATGTATACTCGTCGTGATGGGAGT 741
* * ***** ***** * **** ** * * ** * ***
consensus_3382#0 AACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTT 836
consensus_3382#1 GAAAAAGCTCTATTAAATATTACAACAAA-----ACCCCAAAAATTGCAGAGAAC----- 791
* *** * * *** *** * ** * ** **
consensus_3382#0 TTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGNGGGTTACTGATACT 896
consensus_3382#1 -CAGAGACAAGAATG--------------------------------------------- 805
* ** ** * *
consensus_3382#0 ACGAATGCTGTACNAAAATGTATGATGAATA 927
consensus_3382#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||