cluster # 3390

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Anopheles gambiae
cluster # 3390 cluster # 3390 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3390#0 length = 560 sequences # 2

consensus_3390#1 length = 182 sequences # 1

consensusID : consensus_3390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 560
fasta sequence

                              [TTTTTTATGTATTTAATTCTCATTTATTAGGCAGAAAAGTTCACATGAGGTTTTTTAAGGAGTTGTAGCAAAAAGTAACCAAACGAATCCAATAAGGTGTAAAGAAGGAATGACATTTAACAACAAACGAAAGGTAGGGTCAACCTGTCAGGCGTTATGACACAACTGTCAAATACCAGGGTTCATATATAACACTCCTCCCTTCTTAGAAATGAACTACGGCGAGTATCGCAACGGCGGGTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCTTCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAAATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACCGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTACCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTCGTCTAGGGTTGGTCGCATCTGATCCACGTGACGTTTCATCTGGTTACCATTGCAGTTGATGGAGTAGT]

[+] EMBL AGA280512            [TTTTTTATGTATTTAATTCTCATTTATTAGGCAGAAAAGTTCACATGAGGTTTTTTAAGGAGTTGTAGCAAAAAGTAACCAAACGAATCCAATAAGGTGTAAAGAAGGAATGACATTTAACAACAAACGAAAGGTAGGGTCAACCTGTCAGGCGTTATGACACAACTGTCAAATACCAGGGTTCATATATAACACTCCTCCCTTCTTAGAAATGAACTACGGCGAGTATCGCAACGGCGGGTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCTTCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAAATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACCGGGACACTCGATGT                                                                                                                                                                          ]
[-] EMBL AGA282215            [                                                                                                                                                                                                                                         ACGGCGGGTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCTTCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAGATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTACCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTCGTCTAGGGTTGGTCGCATCTGATCCACGTGACGTTTCATCTGGTTACCATTGCAGTTGATGGAGTAGT]




>consensus_3390#0
TTTTTTATGTATTTAATTCTCATTTATTAGGCAGAAAAGTTCACATGAGGTTTTTTAAGG
AGTTGTAGCAAAAAGTAACCAAACGAATCCAATAAGGTGTAAAGAAGGAATGACATTTAA
CAACAAACGAAAGGTAGGGTCAACCTGTCAGGCGTTATGACACAACTGTCAAATACCAGG
GTTCATATATAACACTCCTCCCTTCTTAGAAATGAACTACGGCGAGTATCGCAACGGCGG
GTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCT
TCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAAATGAGTCTGATGACACGGAGAC
TGTCCGAGATGAAACCGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTG
CCTGCGGTGATGGTGTACCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTC
TGTCCTGTTGTCGTCTAGGGTTGGTCGCATCTGATCCACGTGACGTTTCATCTGGTTACC
ATTGCAGTTGATGGAGTAGT

consensusID : consensus_3390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [GTGATGAACAAGTAGATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTAKCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTNGTCTAGGGTTCGT]

[-] EMBL AGA283049            [GTGATGAACAAGTAGATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTAKCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTNGTCTAGGGTTCGT]




>consensus_3390#1
GTGATGAACAAGTAGATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACGGGGACAC
TCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTAKCTCCG
GAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTNGTCTAGGGTTC
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3390#0      TTTTTTATGTATTTAATTCTCATTTATTAGGCAGAAAAGTTCACATGAGGTTTTTTAAGG 60
consensus_3390#1      ------------------------------------------------------------
                                                                                  

consensus_3390#0      AGTTGTAGCAAAAAGTAACCAAACGAATCCAATAAGGTGTAAAGAAGGAATGACATTTAA 120
consensus_3390#1      ------------------------------------------------------------
                                                                                  

consensus_3390#0      CAACAAACGAAAGGTAGGGTCAACCTGTCAGGCGTTATGACACAACTGTCAAATACCAGG 180
consensus_3390#1      ------------------------------------------------------------
                                                                                  

consensus_3390#0      GTTCATATATAACACTCCTCCCTTCTTAGAAATGAACTACGGCGAGTATCGCAACGGCGG 240
consensus_3390#1      ------------------------------------------------------------
                                                                                  

consensus_3390#0      GTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCT 300
consensus_3390#1      ------------------------------------------------------------
                                                                                  

consensus_3390#0      TCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAAATGAGTCTGATGACACGGAGAC 360
consensus_3390#1      ----------------------GTGATGAACA-AGTAGATGAGTCTGATGACACGGAGAC 37
                                            *    * **  **** **********************

consensus_3390#0      TGTCCGAGATGAAACCGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTG 420
consensus_3390#1      TGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTG 97
                      *************** ********************************************

consensus_3390#0      CCTGCGGTGATGGTGTACCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTC 480
consensus_3390#1      CCTGCGGTGATGGTGTAKCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTC 157
                      ***************** ******************************************

consensus_3390#0      TGTCCTGTTGTCGTCTAGGGTTGGTCGCATCTGATCCACGTGACGTTTCATCTGGTTACC 540
consensus_3390#1      TGTCCTGTTGTNGTCTAGGGTTCGT----------------------------------- 182
                      *********** ********** **                                   

consensus_3390#0      ATTGCAGTTGATGGAGTAGT 560
consensus_3390#1      --------------------