|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 742 fasta sequence
[GGCGTCCTGGAGATTTGGTTTACGCCAAAATATTTCGCGGCAATTCATGGAGTTGGATTGCAGGGGAGATCATCCGCAGCATCGGCACCGTAATGTACGAAGTCATCACAACGGAGCAACGGAGGCTTCGGCGCCACGTGAATCAGCTCCGTCGTCGTACTACAGTCTCTAGGAAACTAGGAGAGCGGGATGAAGATAATCTGCCGCTACAGATCCTGTTAGAGGAGTGGGGTTTGCCCACGGAACAAAGCTCCACTCCCTTGTCCGAGCCATCAGCGCCTGTGCCCACATCGCAGCCGGATGTCTCAGCATCATCTCCGGCAGCCCCTGTGTTTCGGGAAGCAGCACATCCATCCTTGGGTGTCGAGGACGTCAACCACCAGCAGGCACGACTACCACGACGTTCTTCTAGGAGTAGAAGACTGCCTCGTAGGTTCAGCGCGTACCGGCTGAATTAAAAGGGGGAGGTGTTGGGAAAACTGAGCGCAGCACCGCTACTCAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTACAGTGCGTGTCTTGTAAACGCGTCTATTTTATGTAATATGTAATTTGTAAAATAAATAAGTAATAAGTTGCAAACCATAAAAAA]
[+] EMBL BX627868 [GGCGTCCTGGAGATTTGGTTTACGCCAAAATATTTCGCGGCAATTCATGGAGTTGGATTGCAGGGGAGATCATCCGCAGCATCGGCACCGTAATGTACGAAGTCATCACAACGGAGCAACGGAGGCTTCGGCGCCACGTGAATCAGCTCCGTCGTCGTACTACAGTCTCTAGGAAACTAGGAGAGCGGGATGAAGATAATCTGCCGCTACAGATCCTGTTAGAGGAGTGGGGTTTGCCCACGGAACAAAGCTCCACTCCCTTGTCCGAGCCATCAGCGCCTGTGCCCACATCGCAGCCGGATGTCTCAGCATCATCTCCGGCAGCCCCTGTGTTTCGGGAAGCAGCACATCCATCCTTGGGTGTCGAGGACGTCAACCACCAGCAGGCACGACTACCACGACGTTCTTCTAGGAGTAGAAGACTGCCTCGTAGGTTCAGCGCGTACCGGCTGAATTAAAAGGGGGAGGTGTTGGGAAAACTGAGCGCAGCACCGCTACTCAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTACAGTGCGTGTCTTGTAAACGCGTCTA ]
[-] EMBL AGA280561 [ GTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTACAGTGCGTGTCTTGTAAACGCGTCTATTTTATGTAATATGTAATTTGTAAAATAAATAAGTAATAAGTTGCAAACCATAAAAAA]
consensusID : consensus_3394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[ATCTAAAAATCAATATCATAAATTGTAGTTACCGTAAGTAAGGATGGTTTGCTGTTGAAATGTTTAACAATGGATGATATAGATCACTTTACCATACATGTTGGGAAAACTGAGCGCAGCACCGCTACTAAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATTTATTGAAGATAATTGCGTGGCGCGCGCAGGGGCCTTTGCAATATTAAAATAAAGTAATACTTAAAATAACCTTACTTGCTATATATTTGAAAACAGACATGAACATTTAAACGTGGCAACTGTAATGTTGAAGTCAAAAAAGCAGTAGAACTTATTGAAAGCTTTACACATTGAAATAATTGGATCATGAGCTCCTCTGGAAGTACGGGCCC]
[-] EMBL BX615094 [ATCTAAAAATCAATATCATAAATTGTAGTTACCGTAAGTAAGGATGGTTTGCTGTTGAAATGTTTAACAATGGATGATATAGATCACTTTACCATACATGTTGGGAAAACTGAGCGCAGCACCGCTACTAAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATTTATTGAAGATAATTGCGTGGCGCGCGCAGGGGCCTTTGCAATATTAAAATAAAGTAATACTTAAAATAACCTTACTTGCTATATATTTGAAAACAGACATGAACATTTAAACGTGGCAACTGTAATGTTGAAGTCAAAAAAGCAGTAGAACTTATTGAAAGCTTTACACATTGAAATAATTGGATCATGAGCTCCTCTGGAAGTACGGGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3394#0 GGCGTCCTGGAGATTTGGTTTACGCCAAAATATTTCGCGGCAATTCATGGAGTTGGATTG 60
consensus_3394#1 ------------------------------------------------------------
consensus_3394#0 CAGGGGAGATCATCCGCAGCATCGGCACCGTAATGTACGAAGTCATCACAACGGAGCAAC 120
consensus_3394#1 ------------------------------------------------------------
consensus_3394#0 GGAGGCTTCGGCGCCACGTGAATCAGCTCCGTCGTCGTACTACAGTCTCTAGGAAACTAG 180
consensus_3394#1 ------------------------------------------------------------
consensus_3394#0 GAGAGCGGGATGAAGATAATCTGCCGCTACAGATCCTGTTAGAGGAGTGGGGTTTGCCCA 240
consensus_3394#1 ------------------------------------------------------------
consensus_3394#0 CGGAACAAAGCTCCACTCCCTTGTCCGAGCCATCAGCGCCTGTGCCCACATCGCAGCCGG 300
consensus_3394#1 ------------------------------------------------------------
consensus_3394#0 ATGTCTCAGCATCATCTCCGGCAGCCCCTGTGTTTCGGGAAGCAGCACATCCATCCTTGG 360
consensus_3394#1 ------------------------------------------------------------
consensus_3394#0 GTGTCGAGGACGTCAACCACCAGCAGGCACGACTACCACGACGTTCTTCTAGGAGTAGAA 420
consensus_3394#1 --ATCTAAAA-ATCAAT-ATCATAAATTGTAGTTACCGTAAG-------TAAGGATGGTT 49
** * * **** * ** * **** * ** * * *
consensus_3394#0 GACTGCCTCGTAGGTTCAGCGCGTACCGGCTGAATTAAAAGGGGG-AGGTGTTGGGAAAA 479
consensus_3394#1 TGCTGTTGAAATGTTTAACAATGGATGATATAGATCACTTTACCATACATGTTGGGAAAA 109
*** * ** * * * * ** * * ***********
consensus_3394#0 CTGAGCGCAGCACCGCTACTCAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTT 539
consensus_3394#1 CTGAGCGCAGCACCGCTACTAAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTT 169
******************** ***************************************
consensus_3394#0 CGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTT 599
consensus_3394#1 CGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTT 229
************************************************************
consensus_3394#0 CATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTAC 659
consensus_3394#1 CATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATTTATTGA 289
***************************************************** * *
consensus_3394#0 AG-----TGCGTGTCTTGTAAACGCGTCTATTTTATGT-AATAT---GTAATTTGTAAAA 710
consensus_3394#1 AGATAATTGCGTGGCGCGCGCAGGGGCCTTTGCAATATTAAAATAAAGTAATACTTAAAA 349
** ****** * * * * * ** * ** * ** ** ***** *****
consensus_3394#0 TAA----ATAAGTAATAAGTTGCAAACCATAAAAAA------------------------ 742
consensus_3394#1 TAACCTTACTTGCTATATATTTGAAAACAGACATGAACATTTAAACGTGGCAACTGTAAT 409
*** * * *** ** *** ** * * *
consensus_3394#0 ------------------------------------------------------------
consensus_3394#1 GTTGAAGTCAAAAAAGCAGTAGAACTTATTGAAAGCTTTACACATTGAAATAATTGGATC 469
consensus_3394#0 --------------------------
consensus_3394#1 ATGAGCTCCTCTGGAAGTACGGGCCC 495
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||