cluster # 3404

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Anopheles gambiae
cluster # 3404 cluster # 3404 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3404#0 length = 648 sequences # 1

consensus_3404#1 length = 450 sequences # 1
consensus_3404#2 length = 98 sequences # 1

consensusID : consensus_3404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGGAAATGCAAATCGCTTTCGTACAACTCCCGGAACTTCAAACCACGCGTTCGCACGCGCGCGCTCTGGTTCAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTGCTGTACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGTGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGGGGTTTTTTTTTTGGTTAAATTTTTCAAATGGCGAGGAACTAATTCGTGTTAATATTATTATTACGCCCGTTTGTTTCATAGGAAGAAGGGGGAGGAATACTATGTCGAAGTGTCCGAAGATGGGAAGATGGATATAATTATACTCAAAACTCTAAAAACCAGTTCGACATGAAACACACGTGTGCTGCAAATAAAATATACTTTG]

[+] EMBL BX608727             [CCGGAAATGCAAATCGCTTTCGTACAACTCCCGGAACTTCAAACCACGCGTTCGCACGCGCGCGCTCTGGTTCAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTGCTGTACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGTGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGGGGTTTTTTTTTTGGTTAAATTTTTCAAATGGCGAGGAACTAATTCGTGTTAATATTATTATTACGCCCGTTTGTTTCATAGGAAGAAGGGGGAGGAATACTATGTCGAAGTGTCCGAAGATGGGAAGATGGATATAATTATACTCAAAACTCTAAAAACCAGTTCGACATGAAACACACGTGTGCTGCAAATAAAATATACTTTG]




>consensus_3404#0
CCGGAAATGCAAATCGCTTTCGTACAACTCCCGGAACTTCAAACCACGCGTTCGCACGCG
CGCGCTCTGGTTCAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTGCTGTACAT
TTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAA
ACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATG
AAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTC
GATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTT
GAGTGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGC
ACCCATTAGTAGTGTGATTGAGGGGTTTTTTTTTTGGTTAAATTTTTCAAATGGCGAGGA
ACTAATTCGTGTTAATATTATTATTACGCCCGTTTGTTTCATAGGAAGAAGGGGGAGGAA
TACTATGTCGAAGTGTCCGAAGATGGGAAGATGGATATAATTATACTCAAAACTCTAAAA
ACCAGTTCGACATGAAACACACGTGTGCTGCAAATAAAATATACTTTG

consensusID : consensus_3404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [CCGGTACAGCAAACGTGCTACAGCAAATTGATATACATTTAACAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTTTTGTTAAGTGTGCAGTCAAACGTGCTACAGCAAATTGATATACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGGGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGG]

[+] EMBL BM619621             [CCGGTACAGCAAACGTGCTACAGCAAATTGATATACATTTAACAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTTTTGTTAAGTGTGCAGTCAAACGTGCTACAGCAAATTGATATACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGGGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGG]




>consensus_3404#1
CCGGTACAGCAAACGTGCTACAGCAAATTGATATACATTTAACAAATTCCGTTCCGTATA
TCAATTTGCTGTAGCACGTTTTTTGTTAAGTGTGCAGTCAAACGTGCTACAGCAAATTGA
TATACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGA
CGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGA
AAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCAC
CTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAG
TAAGTTTGAGGGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTT
GTGTGGCACCCATTAGTAGTGTGATTGAGG

consensusID : consensus_3404#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 98
fasta sequence

                              [CCGGAAATGCAAATCGCTTTCGGACAACTCCCGGAACTTCAAACCACGCGTGCGCACGCGCGCGCGCTGGTGCAAATTCCGTGCCGGATATCAATCTG]

[+] EMBL BX618090             [CCGGAAATGCAAATCGCTTTCGGACAACTCCCGGAACTTCAAACCACGCGTGCGCACGCGCGCGCGCTGGTGCAAATTCCGTGCCGGATATCAATCTG]




>consensus_3404#2
CCGGAAATGCAAATCGCTTTCGGACAACTCCCGGAACTTCAAACCACGCGTGCGCACGCG
CGCGCGCTGGTGCAAATTCCGTGCCGGATATCAATCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3404#0      ------------------------------------------------------------
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      CCGGTACAGCAAACGTGCTACAGCAAATTGATATACATTTAACAAATTCCGTTCCGTATA 60
                                                                                  

consensus_3404#0      ------------------------------------------------------------
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      TCAATTTGCTGTAGCACGTTTTTTGTTAAGTGTGCAGTCAAACGTGCTACAGCAAATTGA 120
                                                                                  

consensus_3404#0      ------------------------------------------------------------
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      TATACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGA 180
                                                                                  

consensus_3404#0      ------------------------------------------------------------
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      CGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGA 240
                                                                                  

consensus_3404#0      ------------------------------------------CCGGAAATGCAAATCGCT 18
consensus_3404#2      ------------------------------------------CCGGAAATGCAAATCGCT 18
consensus_3404#1      AAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCAC 300
                                                                  *     ***** *   

consensus_3404#0      TTCGTACAACTCCCGGAACTTCAAACCACGC-GTTCGCACGCGCGCGCTCTGGTTCAAAT 77
consensus_3404#2      TTCGGACAACTCCCGGAACTTCAAACCACGC-GTGCGCACGCGCGCGCGCTGGTGCAAAT 77
consensus_3404#1      CTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAG 360
                       ***  * *    ** *  **   * * **  *   ** *********    **   ** 

consensus_3404#0      TCCGTTCC-GTATATCAATTTGCTGTAGCACGTTTGCTGTACATTTAACAAAAAACCGCC 136
consensus_3404#2      TCCGTGCC-GGATATCAATCTG-------------------------------------- 98
consensus_3404#1      TAAGTTTGAGGGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTT 420
                      *  **    *  **    * *                                       

consensus_3404#0      CCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAA 196
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      GTGTGGCACCCATTAGTAGTGTGATTGAGG------------------------------ 450
                                                                                  

consensus_3404#0      AGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAAC 256
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      ------------------------------------------------------------
                                                                                  

consensus_3404#0      TGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTAT 316
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      ------------------------------------------------------------
                                                                                  

consensus_3404#0      GATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGTGTACTTGTATAG 376
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      ------------------------------------------------------------
                                                                                  

consensus_3404#0      GCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTG 436
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      ------------------------------------------------------------
                                                                                  

consensus_3404#0      ATTGAGGGGTTTTTTTTTTGGTTAAATTTTTCAAATGGCGAGGAACTAATTCGTGTTAAT 496
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      ------------------------------------------------------------
                                                                                  

consensus_3404#0      ATTATTATTACGCCCGTTTGTTTCATAGGAAGAAGGGGGAGGAATACTATGTCGAAGTGT 556
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      ------------------------------------------------------------
                                                                                  

consensus_3404#0      CCGAAGATGGGAAGATGGATATAATTATACTCAAAACTCTAAAAACCAGTTCGACATGAA 616
consensus_3404#2      ------------------------------------------------------------
consensus_3404#1      ------------------------------------------------------------
                                                                                  

consensus_3404#0      ACACACGTGTGCTGCAAATAAAATATACTTTG 648
consensus_3404#2      --------------------------------
consensus_3404#1      --------------------------------