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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAACAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAACAAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATCACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGGCACGATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTGCTCGGCGCTAATGGCGAAGGAGAATCGGGAAAAGTTCCTCAAAGGCGAGGGCTTGCAGCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGTCGCTGAAGGTGCTGGATCACGCGATGGCCGGACCGGACGGGCGCGACAATTGCAACAAGTTCGTCGACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAGAAGCGCCTGCTCAGCACGGACGAGCACGAGGAGCACATCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTG]
[+] EMBL BX621821 [CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAACAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAACAAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATCACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGGCACGATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTGCTCGGCGCTAATGGCGAAGGAGAATCGGGAAAAGTTCCTCAAAGGCGAGGGCTTGCAGCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGTCGCTGAAGGTGCTGGATCACGCGATGGCCGGACCGGACGGGCGCGACAATTGCAACAAGTTCGTCGACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAGAAGCGCCTGCTCAGCACGGACGAGCACGAGGAGCACATCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTG]
consensusID : consensus_341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CGCCTAGATGAGTCTGTGAAGGAGGAAGCGGACGGTGTGCACAACACGCTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGAGCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCTGGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAAGCAGCGCGTCCTAAAGATTCTGAACCTTCACAACGGGTCGATGAAAATGATACGCAACGTGATGCGCGAGTACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAGGAGCAGTCCCACATACTGCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTAGCTCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAACCATTTCCATGG]
[+] EMBL BX613360 [CGCCTAGATGAGTCTGTGAAGGAGGAAGCGGACGGTGTGCACAACACGCTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGAGCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCTGGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAAGCAGCGCGTCCTAAAGATTCTGAACCTTCACAACGGGTCGATGAAAATGATACGCAACGTGATGCGCGAGTACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAGGAGCAGTCCCACATACTGCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTAGCTCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAACCATTTCCATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_341#0 CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAA 60
consensus_341#1 -----------------------------------------------------CGCCTAG 7
*** *
consensus_341#0 CAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAAC 120
consensus_341#1 ATGAGTCTGTGAAGGAGGAAGCGGA--CGG-TGTGCAC-AACACGCTCGCCATCTTCGAG 63
* ** ** * *** * ** *** ** ** * ** * ** * * *
consensus_341#0 AAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATC 180
consensus_341#1 AATCTG-ATCGAGGTGAAG-GCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATC 121
** *** * * * *** ** * * * * * * ** ** * ****
consensus_341#0 ACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGG 240
consensus_341#1 ATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGC-GCCTGCTGTCGAAGTT 180
* *** * * * * * * ** ** ***** * * ** * *
consensus_341#0 CAC-GATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTG 299
consensus_341#1 TACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGA 240
** ** * * * *** * ** * ***** * *** *
consensus_341#0 CTCGGCGCTAATGGCGAA--GGAGAATCGGG-AAAAGTTCCTCAAAGGCGAGGGCTTGCA 356
consensus_341#1 CAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGA 300
* ** * * * * * * **** * ** * * *** **** * * *
consensus_341#0 GCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGT---CGCTGAAGGT 413
consensus_341#1 GCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCT 360
** * ** *** ** ** **** ****** ** * * *** ** *
consensus_341#0 GCTGGATCACGCGATGGCCGGA-----CCGGACGGGCGCGACAATTGCAACAAGTTCGTC 468
consensus_341#1 GGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAA-GCAGCGCGTCC-TA 418
* * *** *** *** ** * * **** * * * *** * ** * *
consensus_341#0 GACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAG 528
consensus_341#1 AAGATTCTGAACCTTCACAACGG---------GTCGATGAAAATG---ATACGCAACGTG 466
* ***** *** * ** ** ***** * * * *** * * *
consensus_341#0 AAGCGCCTGCTCAGCACGGACGAGCACGAGGA-GCACATCGTCTCCATCATTGCCAGCAT 587
consensus_341#1 ATGCGCGAGT---ACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAG 523
* **** * * *** * * * ** ** * * * ** ** * **
consensus_341#0 GCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGA 647
consensus_341#1 G---AGCAGTCCCACATACT-GCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTA-GC 578
* *** ** * * ***** * * * * * ** ** * *
consensus_341#0 TTTCGAGAAGGTGGAACGACTGATGGA-ACTGCACCGCAAGTATTTGGACAAGGTGGAAG 706
consensus_341#1 TCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAAC 638
* **** * * * * * * **** ** * * ** ** * **
consensus_341#0 CGATGGACCGTG- 718
consensus_341#1 CATT--TCCATGG 649
* * ** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||