cluster # 3424

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Anopheles gambiae
cluster # 3424 cluster # 3424 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3424#0 length = 662 sequences # 2

consensus_3424#1 length = 372 sequences # 1

consensusID : consensus_3424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 662
fasta sequence

                              [CCGGTTGTGTACGTGTTGGCGAGAGTGAAACGGTGTGAAAAGCCCCACAAGAGCCAGGTAAGGCAGGAGGGAGAGGCGGTGGGAACTAATGCTTGGGAGTTGGAGTTCGAGTTCAGTTTCGCCAAACCGCCGAACGTCAACACAATAACGGGAAAGTTTTTTTTCTCCACTCCGCTGGCGAAAGTGGCGTGCGTGCGTGTGTGTGTGTGCGTGTTTGGTTGTTGTTTGCCCTCGTGCCCGATTTGCCCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCTTCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTGTGTGTGTGTGTTGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAGGTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAACCGTTCGCGACCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTCTCTGTGTGTGTGTGTGGGGGGTTTTTTGGGGGGGGGTCAATTGCTC]

[+] EMBL BM625322             [CCGGTTGTGTACGTGTTGGCGAGAGTGAAACGGTGTGAAAAGCCCCACAAGAGCCAGGTAAGGCAGGAGGGAGAGGCGGTGGGAACTAATGCTTGGGAGTTGGAGTTCGAGTTCAGTTTCGCCAAACCGCCGAACGTCAACACAATAACGGGAAAGTTTTTTTTCTCCACTCCGCTGGCGAAAGTGGCGTGCGTGCGTGTGTGTGTGTGCGTGTTTGGTTGTTGTTTGCCCTCGTGCCCGATTTGCCCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCTTCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTGTGTGTGTGTGTTGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAGGTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAACCGTTCGCGACCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTCTCTGTGTGTGTGTGTGGGGGGTTTTTTGGGGGGGGGTCAATTGCTC]
[+] EMBL AGA282556            [                                                                                                                                                                                                                                                      CCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCTTCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTGTGTGTGTGTG TGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAGGTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAATCGTTCGCGACCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTC      GTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTCTGTGTGTGTGTGTGTttttgt                         ]




>consensus_3424#0
CCGGTTGTGTACGTGTTGGCGAGAGTGAAACGGTGTGAAAAGCCCCACAAGAGCCAGGTA
AGGCAGGAGGGAGAGGCGGTGGGAACTAATGCTTGGGAGTTGGAGTTCGAGTTCAGTTTC
GCCAAACCGCCGAACGTCAACACAATAACGGGAAAGTTTTTTTTCTCCACTCCGCTGGCG
AAAGTGGCGTGCGTGCGTGTGTGTGTGTGCGTGTTTGGTTGTTGTTTGCCCTCGTGCCCG
ATTTGCCCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCTT
CGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTGT
GTGTGTGTGTTGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAGG
TAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAACCGTTCGCGAC
CCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAGTCGTAACGCGGGG
CCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTC
TGCGCAAGTGTGTGTCTCTGTGTGTGTGTGTGGGGGGTTTTTTGGGGGGGGGTCAATTGC
TC

consensusID : consensus_3424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [CCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTATGTGTGTGTGTGTGTTTTTGTGTGTATGTCAATTGCACCACCGAGCGAGTGAAGCCACCGATCAACCTGCCCTGGTCCCGGTCCGCTGACAGCGACCGGAAATCGATTATGCCCACCCGGGGGGAACACCACACCACGATCAACTGTGTGACGGGCGTGTAGCGTTGTACTAGGCGGGGAGCACCATGGCACCGAACCTGAGCAAGCTGCTCGGCAACCAGAATGCCGTGGTCGGTGTGGCC]

[-] EMBL AGA280927            [CCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTATGTGTGTGTGTGTGTTTTTGTGTGTATGTCAATTGCACCACCGAGCGAGTGAAGCCACCGATCAACCTGCCCTGGTCCCGGTCCGCTGACAGCGACCGGAAATCGATTATGCCCACCCGGGGGGAACACCACACCACGATCAACTGTGTGACGGGCGTGTAGCGTTGTACTAGGCGGGGAGCACCATGGCACCGAACCTGAGCAAGCTGCTCGGCAACCAGAATGCCGTGGTCGGTGTGGCC]




>consensus_3424#1
CCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAACGCGGGGCCAGCT
CTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCA
AGTGTGTGTATGTGTGTGTGTGTGTTTTTGTGTGTATGTCAATTGCACCACCGAGCGAGT
GAAGCCACCGATCAACCTGCCCTGGTCCCGGTCCGCTGACAGCGACCGGAAATCGATTAT
GCCCACCCGGGGGGAACACCACACCACGATCAACTGTGTGACGGGCGTGTAGCGTTGTAC
TAGGCGGGGAGCACCATGGCACCGAACCTGAGCAAGCTGCTCGGCAACCAGAATGCCGTG
GTCGGTGTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3424#0      CCGGTTGTGTACGTGTTGGCGAGAGTGAAACGGTGTGAAAAGCCCCACAAGAGCCAGGTA 60
consensus_3424#1      ------------------------------------------------------------
                                                                                  

consensus_3424#0      AGGCAGGAGGGAGAGGCGGTGGGAACTAATGCTTGGGAGTTGGAGTTCGAGTTCAGTTTC 120
consensus_3424#1      ------------------------------------------------------------
                                                                                  

consensus_3424#0      GCCAAACCGCCGAACGTCAACACAATAACGGGAAAGTTTTTTTTCTCCACTCCGCTGGCG 180
consensus_3424#1      ------------------------------------------------------------
                                                                                  

consensus_3424#0      AAAGTGGCGTGCGTGCGTGTGTGTGTGTGCGTGTTTGGTTGTTGTTTGCCCTCGTGCCCG 240
consensus_3424#1      -----------------------------------------------CCATTCGCAGCTC 13
                                                                      *  ***   *  

consensus_3424#0      ATT-TGCCCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCT 299
consensus_3424#1      ATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAACGCGGGGCCAGCTCT---CCTTCTCT 70
                      **  * * *  ** * *       *  *  *** *  *   *  ** **   ***  ***

consensus_3424#0      TCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTG 359
consensus_3424#1      C----TGACAGCTGGGTGT-GACACACGATAAGGGGTCACGATAC-TGTCTGCGCAAGTG 124
                           * ***    ***** *    ** * *  *   * ** * * **  **     ***

consensus_3424#0      TGTGTGTGTGTTGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAG 419
consensus_3424#1      TGTGTATGTGT-GTGTGTGTGTTTTTGTGTGTATGTCAATTGCACCACCGAGCGAGTGAA 183
                      ***** ***** *** * **** * ****** *   **      *   ** * **   * 

consensus_3424#0      GTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAACCGTTCGCGA 479
consensus_3424#1      GCCACCGATCAACCTGCCCTGGTCCCGGTCCG-CTGACAGCGACCGGAAATCGATTATG- 241
                      *  * *      *     ** * * * *   * ***     *      ** ** *   * 

consensus_3424#0      CCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAGTCGTAACGCGGG 539
consensus_3424#1      CCCACCCGGGGGGAACA--CCACACCACGATCAACTGTGT-GACGGGCGTGTAGCGTTGT 298
                      ****  **  *   *    ** * *      *  *   ** * **     *** **  * 

consensus_3424#0      GCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGT 599
consensus_3424#1      ACTAGGCGGGGAGCACCATGGCA-CCGAACCTGA-GCAAGCTGCTCGGCAACCAGAATGC 356
                       * **        * *  ** ** * *    ***  ** * *    **  ** * * ** 

consensus_3424#0      CTGCGCAAGTGTGTGTCTCTGTGTGTGTGTGTGGGGGGTTTTTTGGGGGGGGGTCAATTG 659
consensus_3424#1      CGTGGTCGGTGTG-GCC------------------------------------------- 372
                      *   *   ***** * *                                           

consensus_3424#0      CTC 662
consensus_3424#1      ---