cluster # 3444

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Anopheles gambiae
cluster # 3444 cluster # 3444 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3444#0 length = 649 sequences # 2

consensus_3444#1 length = 291 sequences # 1

consensusID : consensus_3444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 649
fasta sequence

                              [CAGAATCCCNACGAGTGATTATAAAGCGGAAGAAAGTGCTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAGGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGTTTTGATGCGCACTAGCGTTCGATTAACGGTATGTGGTAAAAAAAAGAACTGGCATGCAAAGGAACTCTTTTTTTTCGTTGAACGTAAATTATCGCCACTGGGAAGATGACTGTTGTGCACGGGGTTGCAAGCAGAAGGGAGCCACACAGAGAGCAAAAATTCACATTACACAATTATTATGTAGTTCAATTATCTTTAGAATGTCGAAATACTAAAATTGATTTATACATCGCTAGGTTCAAGTACTGTACTGTCCTTTGTATAATTGTAAGTGTTTTTGTTCTCTCCGGTATTTTGTTGATTGTTTTAACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGACCAGGGAGAGTGTTGAATAGCAGGATTTGAACAATAATCGTTGCGGACAGATAGTAGATGCAGTCANGTAAACTTAGAAAAGGAGGAAGGAACTAAGGCGAAAAACATACACA]

[+] EMBL BX469227             [CAGAATCCCNACGAGTGATTATAAAGCGGAAGAAAGTGCTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAGGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGTTTTGATGCGCACTAGCGTTCGATTAACGGTATGTGGTAAAAAAAAGAACTGGCATGCAAAGGAACTCTTTTTTTTCGTTGAACGTAAATTATCGCCACTGGGAAGATGACTGTTGTGCACGGGGTTGCAAGCAGAAGGGAGCCACACAGAGAGCAAAAATTCACATTACACAATTATTATGTAGTTCAATTATCTTTAGAATGTCGAAATACTAAAATTGATTTATACATCGCTAGGTTCAAGTACTGTACTGTCCTTTGTATAATTGTAAGTGTTTTTGTTCTCTCCGGTATTTTGTTGATTGTTTTAACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGACCAGGGAGAGTGTTGAATAGCAGGATTTGAACAATAATCGTTGCGGACAGATAGTAGATGCAGTCANGTAAACTTAGAAAAGGAGGAAGGAACTAAGGCGAAAAACATACACA]
[-] EMBL AGA282817            [                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCCTTT TATAATTGTAA TGTTTTT TTCTCTCC GAATTTTATTGATTGTTTTAACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGA                                                                                                                 ]




>consensus_3444#0
CAGAATCCCNACGAGTGATTATAAAGCGGAAGAAAGTGCTAAACCAGTACAACATCACTC
TACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAGGA
GTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT
TTTGATGCGCACTAGCGTTCGATTAACGGTATGTGGTAAAAAAAAGAACTGGCATGCAAA
GGAACTCTTTTTTTTCGTTGAACGTAAATTATCGCCACTGGGAAGATGACTGTTGTGCAC
GGGGTTGCAAGCAGAAGGGAGCCACACAGAGAGCAAAAATTCACATTACACAATTATTAT
GTAGTTCAATTATCTTTAGAATGTCGAAATACTAAAATTGATTTATACATCGCTAGGTTC
AAGTACTGTACTGTCCTTTGTATAATTGTAAGTGTTTTTGTTCTCTCCGGTATTTTGTTG
ATTGTTTTAACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGACCAG
GGAGAGTGTTGAATAGCAGGATTTGAACAATAATCGTTGCGGACAGATAGTAGATGCAGT
CANGTAAACTTAGAAAAGGAGGAAGGAACTAAGGCGAAAAACATACACA

consensusID : consensus_3444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [GGGCAATGCAGCCGGCATGGGCTACAACGGGATGACACCAGCGGTCGGGACCGTTGCCTTTCCCTTTCTACGCTACGGCTTGAACCTGGACCGGAAGTAATCGGACACTCACTACTAACATCGAGGGGGTTTATAAAGCGGAAGAAAGTGTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAAGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT]

[+] EMBL AGA281193            [GGGCAATGCAGCCGGCATGGGCTACAACGGGATGACACCAGCGGTCGGGACCGTTGCCTTTCCCTTTCTACGCTACGGCTTGAACCTGGACCGGAAGTAATCGGACACTCACTACTAACATCGAGGGGGTTTATAAAGCGGAAGAAAGTGTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAAGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT]




>consensus_3444#1
GGGCAATGCAGCCGGCATGGGCTACAACGGGATGACACCAGCGGTCGGGACCGTTGCCTT
TCCCTTTCTACGCTACGGCTTGAACCTGGACCGGAAGTAATCGGACACTCACTACTAACA
TCGAGGGGGTTTATAAAGCGGAAGAAAGTGTAAACCAGTACAACATCACTCTACAACAAA
ACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAAGAGTAATTAGA
TCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3444#0      ------------------------------------------------------------
consensus_3444#1      GGGCAATGCAGCCGGCATGGGCTACAACGGGATGACACCAGCGGTCGGGACCGTTGCCTT 60
                                                                                  

consensus_3444#0      ----------------------------------------------------CAGAATCC 8
consensus_3444#1      TCCCTTTCTACGCTACGGCTTGAACCTGGACCGGAAGTAATCGGACACTCACTACTAACA 120
                                                                           *  * * 

consensus_3444#0      CNACGAGTGATTATAAAGCGGAAGAAAGTGCTAAACCAGTACAACATCACTCTACAACAA 68
consensus_3444#1      TCGAGGGGGTTTATAAAGCGGAAGAAAGTG-TAAACCAGTACAACATCACTCTACAACAA 179
                          * * * ******************** *****************************

consensus_3444#0      AACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAGGAGTAATTAG 128
consensus_3444#1      AACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAAGAGTAATTAG 239
                      ************************************************* **********

consensus_3444#0      ATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGTTTTGATGC 188
consensus_3444#1      ATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT-------- 291
                      ****************************************************        

consensus_3444#0      GCACTAGCGTTCGATTAACGGTATGTGGTAAAAAAAAGAACTGGCATGCAAAGGAACTCT 248
consensus_3444#1      ------------------------------------------------------------
                                                                                  

consensus_3444#0      TTTTTTTCGTTGAACGTAAATTATCGCCACTGGGAAGATGACTGTTGTGCACGGGGTTGC 308
consensus_3444#1      ------------------------------------------------------------
                                                                                  

consensus_3444#0      AAGCAGAAGGGAGCCACACAGAGAGCAAAAATTCACATTACACAATTATTATGTAGTTCA 368
consensus_3444#1      ------------------------------------------------------------
                                                                                  

consensus_3444#0      ATTATCTTTAGAATGTCGAAATACTAAAATTGATTTATACATCGCTAGGTTCAAGTACTG 428
consensus_3444#1      ------------------------------------------------------------
                                                                                  

consensus_3444#0      TACTGTCCTTTGTATAATTGTAAGTGTTTTTGTTCTCTCCGGTATTTTGTTGATTGTTTT 488
consensus_3444#1      ------------------------------------------------------------
                                                                                  

consensus_3444#0      AACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGACCAGGGAGAGTG 548
consensus_3444#1      ------------------------------------------------------------
                                                                                  

consensus_3444#0      TTGAATAGCAGGATTTGAACAATAATCGTTGCGGACAGATAGTAGATGCAGTCANGTAAA 608
consensus_3444#1      ------------------------------------------------------------
                                                                                  

consensus_3444#0      CTTAGAAAAGGAGGAAGGAACTAAGGCGAAAAACATACACA 649
consensus_3444#1      -----------------------------------------