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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 916 fasta sequence
[GACCGGGCGCGAACTTGTTGTTTGTATCGCTGCTGTGTGTGTGCGCGCACTGAAGGCGTCCTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCGCGTGTGCAAATCGAGTGATCCAAGAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATGGTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACA-CACGTGCGTGTGTATTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACTGCGAAGAGGATCGCAAAAAGAGCGTTAACGAGTTCTTCGTACAGCAAGCATCAGGGGCAGGAGTCATTGTAGTTGATGGTGCGAAGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACCGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGATGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCAT]
[+] EMBL CNS08KXE [GACCGGGCGCGAACTTGTTGTTTGTATCGCTGCTGTGTGTGTGCGCGCACTGAAGGCGTCCTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCGCGTGTGCAAATCGAGTGATCCAAGAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATGGTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACA CACGTGCGTGTGTATTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACTGCGAAGAGGATCGCAAAAAGAGCGTTAACGAGTTCTTCGTACAGCAAGCATCAGGGGCAGGAGTCATTGTAGTTGATGGTGCGAAGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACCGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGATGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCAT]
[+] EMBL BM611668 [ ccgTGTGTGTGTGCGCGCACTGAAGGCGTCCTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCGCGTGTGCAAATCGAGTGATCCAAAAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATGGTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACAGCACGTGCGTGTGTATTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACTGCGAAGAGGATCGCAAAAAGAGCGTTAACGAGGTCTTCGTACAGCAAGCATCAGGGGCAGGAGTCATTGTAGTTGATGGTGC ]
consensusID : consensus_3448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGCGGACGCGTGGGGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACAGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGACGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCATCACAGACTACGAGTGCCGGTACTACATGCATCAGGTAATGACCGGTGTGAAATATCTGCACGACAAGCACATCATCCATCGGGACTTGAAGCTCGGCAATCTGTTTCTGAATGATGAGCTGCACGTCAA]
[+] EMBL BM581288 [CCGCGGACGCGTGGGGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACAGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGACGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCATCACAGACTACGAGTGCCGGTACTACATGCATCAGGTAATGACCGGTGTGAAATATCTGCACGACAAGCACATCATCCATCGGGACTTGAAGCTCGGCAATCTGTTTCTGAATGATGAGCTGCACGTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3448#0 GACCGGGCGCGAACTTGTTGTTTGTATCGCTGCTGTGTGTGTGCGCGCACTGAAGGCGTC 60
consensus_3448#1 ------------------------------------------------------------
consensus_3448#0 CTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCG 120
consensus_3448#1 ------------------------------------------------------------
consensus_3448#0 CGTGTGCAAATCGAGTGATCCAAGAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATG 180
consensus_3448#1 ------------------------------------------------------------
consensus_3448#0 GTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACACACGTGCGTGTGTA 240
consensus_3448#1 ------------------------------------------------------------
consensus_3448#0 TTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACT 300
consensus_3448#1 ------------------------------------------------------------
consensus_3448#0 GCGAAGAGGATCGCAAAAAGAGCGTTAACGAGTTCTTCGTACAGCAAGCATCAGGGGCAG 360
consensus_3448#1 ------------------------------------------------------------
consensus_3448#0 GAGTCATTGTAGTTGATGGTGCGAAGTAAAATCGAATGACCAACAGCGTAAAAGCCCATC 420
consensus_3448#1 ---------CCGCGGACG-CGTGGGGTAAAATCGAATGACCAACAGCGTAAAAGCCCATC 50
* ** * * * ***********************************
consensus_3448#0 GATCT--ATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCG 478
consensus_3448#1 GATCTCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCG 110
***** *****************************************************
consensus_3448#0 CGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTC 538
consensus_3448#1 CGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTC 170
************************************************************
consensus_3448#0 TACCGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGA 598
consensus_3448#1 TACAGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGA 230
*** ********************************************************
consensus_3448#0 AAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGG 658
consensus_3448#1 AAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGG 290
************************************************************
consensus_3448#0 CGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAA 718
consensus_3448#1 CGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAA 350
************************************************************
consensus_3448#0 GATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAAT 778
consensus_3448#1 GATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAAT 410
************************************************************
consensus_3448#0 CACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGATGA 838
consensus_3448#1 CACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGACGA 470
********************************************************* **
consensus_3448#0 TCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCA 898
consensus_3448#1 TCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCA 530
************************************************************
consensus_3448#0 CAAGCGTCGAAAGATCAT------------------------------------------ 916
consensus_3448#1 CAAGCGTCGAAAGATCATCACAGACTACGAGTGCCGGTACTACATGCATCAGGTAATGAC 590
******************
consensus_3448#0 ------------------------------------------------------------
consensus_3448#1 CGGTGTGAAATATCTGCACGACAAGCACATCATCCATCGGGACTTGAAGCTCGGCAATCT 650
consensus_3448#0 ---------------------------
consensus_3448#1 GTTTCTGAATGATGAGCTGCACGTCAA 677
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||