cluster # 3458

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Anopheles gambiae
cluster # 3458 cluster # 3458 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3458#0 length = 473 sequences # 1

consensus_3458#1 length = 298 sequences # 2

consensusID : consensus_3458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [GCGGGAATCCCTTAGCCCAGAATTCCCCGGGGTTTTAACGGCACAAGGTGTGTGGCTGTGTCCCACACCAGTAGCAAACATTGCACTGGCGCCCGCAGGCGGCTCATCTGCGGGGTGCAACCACTGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGTCGCCGACGGGCACAAGAGCACGAACGTCATCAAGTCGACCAGCAATGCGGACGAGACTGGAGCGGGTGTTGATTCACACGCCGGAGTCCCCGGAATTCCCTCTATTCCACACCCCGGGGGTGCACCCCGGCCGTGCCAGTCCCATTGCGATTGCCGCCGTAAGACAAACNAACCCGGGGTCGGTGGGTAAGCCCGGATTGGTTGCCTGGAAAGCACCACGAAAACAATCAAAACGGGCTGGGGTGCGAAGGG]

[+] EMBL AL696493             [GCGGGAATCCCTTAGCCCAGAATTCCCCGGGGTTTTAACGGCACAAGGTGTGTGGCTGTGTCCCACACCAGTAGCAAACATTGCACTGGCGCCCGCAGGCGGCTCATCTGCGGGGTGCAACCACTGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGTCGCCGACGGGCACAAGAGCACGAACGTCATCAAGTCGACCAGCAATGCGGACGAGACTGGAGCGGGTGTTGATTCACACGCCGGAGTCCCCGGAATTCCCTCTATTCCACACCCCGGGGGTGCACCCCGGCCGTGCCAGTCCCATTGCGATTGCCGCCGTAAGACAAACNAACCCGGGGTCGGTGGGTAAGCCCGGATTGGTTGCCTGGAAAGCACCACGAAAACAATCAAAACGGGCTGGGGTGCGAAGGG]




>consensus_3458#0
GCGGGAATCCCTTAGCCCAGAATTCCCCGGGGTTTTAACGGCACAAGGTGTGTGGCTGTG
TCCCACACCAGTAGCAAACATTGCACTGGCGCCCGCAGGCGGCTCATCTGCGGGGTGCAA
CCACTGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCAGCAGCAGCACC
GCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGTCGCCGACGGGCACAAGAGC
ACGAACGTCATCAAGTCGACCAGCAATGCGGACGAGACTGGAGCGGGTGTTGATTCACAC
GCCGGAGTCCCCGGAATTCCCTCTATTCCACACCCCGGGGGTGCACCCCGGCCGTGCCAG
TCCCATTGCGATTGCCGCCGTAAGACAAACNAACCCGGGGTCGGTGGGTAAGCCCGGATT
GGTTGCCTGGAAAGCACCACGAAAACAATCAAAACGGGCTGGGGTGCGAAGGG

consensusID : consensus_3458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 298
fasta sequence

                              [CATCCCAGGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGGCGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGGTGGCTGCTGCTCCCACACAGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCATCTGCCGGGGTGCAACCCACGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCGGTAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGT]

[+] EMBL AGA281441            [CATCCCAGGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGGCGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGGTGGCTGCTGCTCCCACACAGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCATCTGCCGGGGTGCAACCCACGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCGGTAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGT]
[-] EMBL BM579857             [       GGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGGCGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGGTGGCTGCTGCTCCCACACAGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCATCTGCCGGGGTGCAACCCACGGAACACAGTGTTAATACTAgcgg                                                                              ]




>consensus_3458#1
CATCCCAGGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGG
CGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGG
TGGCTGCTGCTCCCACACAGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCATCTG
CCGGGGTGCAACCCACGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCG
GTAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3458#0      ------------------------------------------------------------
consensus_3458#1      CATCCCAGGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGG 60
                                                                                  

consensus_3458#0      -----------GCGGGAATCCCTTAGCCCA-GAATTCCCCGGGGTTTTAACGGCACAAGG 48
consensus_3458#1      CGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGG 120
                                  *****   **    ** * * **   *  * *      *  **   **

consensus_3458#0      TGTGTGGCTGTGTCCCACACCAGTAGCAAACATTGC-ACTGGCGCCCGCAGGCGGCTCAT 107
consensus_3458#1      TG-GCTGCTGC-TCCCACAC-AGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCAT 177
                      ** *  ****  ******** ** ***** ****** ** ********* *  * *****

consensus_3458#0      CTGC-GGGGTGCAACCACTGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACA 166
consensus_3458#1      CTGCCGGGGTGCAACCCACGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACA 237
                      **** ***********   *****************************************

consensus_3458#0      GC------AGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCG 220
consensus_3458#1      GCGGTAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCG 297
                      **      ****************************************************

consensus_3458#0      TCGCCGACGGGCACAAGAGCACGAACGTCATCAAGTCGACCAGCAATGCGGACGAGACTG 280
consensus_3458#1      T----------------------------------------------------------- 298
                      *                                                           

consensus_3458#0      GAGCGGGTGTTGATTCACACGCCGGAGTCCCCGGAATTCCCTCTATTCCACACCCCGGGG 340
consensus_3458#1      ------------------------------------------------------------
                                                                                  

consensus_3458#0      GTGCACCCCGGCCGTGCCAGTCCCATTGCGATTGCCGCCGTAAGACAAACNAACCCGGGG 400
consensus_3458#1      ------------------------------------------------------------
                                                                                  

consensus_3458#0      TCGGTGGGTAAGCCCGGATTGGTTGCCTGGAAAGCACCACGAAAACAATCAAAACGGGCT 460
consensus_3458#1      ------------------------------------------------------------
                                                                                  

consensus_3458#0      GGGGTGCGAAGGG 473
consensus_3458#1      -------------