cluster # 3466

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3466 cluster # 3466 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3466#0 length = 1334 sequences # 1

consensus_3466#1 length = 341 sequences # 2

consensusID : consensus_3466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1334
fasta sequence

                              [CGATGCAAGAATTCCCGCAGGTTANGAGTGGTATCCCATATGTATCTTGCATTTAATAAATAATCTAGCCTCGGAGAGGGGTTGCGGNGAACCAGCAAGCCAAAACCAGATAGTGATCCCTAGTCCCCTGCAACGCACATACACCTGCGCCTCCCGCAGAGCGTAAGAGAAAAGCCACATCTGCCCTGTGCTCCTACTTCTGNGATCCTACTTCGGGTCCCTGCACGCAAGTGCAGCTTGGGTTGGTGCTTNAAAGAGGGAGCAGGGTGTTGGTTGTNAACCCCCATATTCCATTATGGTNGNGAGTTATCATGATCAAAATTGCAGCAGCAGTCAGCAAGCAGCAGCAAAGGTATCTCAGTAAGGGTGGGTCCCAAGTATATTTGTNATCTACACGTACTGTATCTTACTAGATTAAGTTGGTATCATACATATTCNTACTGATAANNGATNGACCGGGCCCCCCGGTNGATTNGATTGTACNNAGATATGCTTATGCAAACACGAATTAATTGCATAGNAATTGGACAACCANGGAAGNTCGGTAAATCACGGGGAAATTTTACNTTCCACATGCTCAAGANACNGGGANAACACAGGAACAAGAAAAAAAACCNAGNTNGGANAACNACAGGGGAACACGAAAAGAACANAAAAAGAGCAGAACGGGGAACTTGCCAGTTNAAGACAAACTACAGCAATGGNNAGGAGACAGAGGGGTAAACACACACAACANCNTGGGACATAAAATNACCCGCGAATAACTCCCGGCCTAACACAATNNAGNCCACAAAAACCCAGCACACAAAAATCCNGAACAACCTACTNGCGATCAACAAAAANCACATCACCCNCGGGCCANCTCAAAAGACTACCGTAAACAAAACCAACACACCAANNAACGCACAACNAAACNGCANGNAAAACAAAGCAGTGCTNACGAGCGACAATNNCCNGCCCACCACNACAACNTCNTGAGNACCAATCNCAACGGCCCNACCCCCCNAGNGCGTGNCACAAACATTGANANATCCTAATACCTAGCNCAACACCANCGCAGACCCAANAATACACANGACNAATAACAANAACGCCAAATACATGGACCCCACCACCACACCNCCATGGATCACCCANTATGGCAAAAACCCACACCTGNAGCAAACAAANATNACACAANAGGCCAATGATAGCGAACCGACAAGCGACACCCNNCAACCNNCAANACAAAGCAAACNGAACAGCAGAAAAANCGACTAATANAAACNAAAACNTAGCCCCAAATCCAGCATAACATGACACCACAGCAAACCCGAACGGGNNAACATCACCTC]

[+] EMBL AL694598             [CGATGCAAGAATTCCCGCAGGTTANGAGTGGTATCCCATATGTATCTTGCATTTAATAAATAATCTAGCCTCGGAGAGGGGTTGCGGNGAACCAGCAAGCCAAAACCAGATAGTGATCCCTAGTCCCCTGCAACGCACATACACCTGCGCCTCCCGCAGAGCGTAAGAGAAAAGCCACATCTGCCCTGTGCTCCTACTTCTGNGATCCTACTTCGGGTCCCTGCACGCAAGTGCAGCTTGGGTTGGTGCTTNAAAGAGGGAGCAGGGTGTTGGTTGTNAACCCCCATATTCCATTATGGTNGNGAGTTATCATGATCAAAATTGCAGCAGCAGTCAGCAAGCAGCAGCAAAGGTATCTCAGTAAGGGTGGGTCCCAAGTATATTTGTNATCTACACGTACTGTATCTTACTAGATTAAGTTGGTATCATACATATTCNTACTGATAANNGATNGACCGGGCCCCCCGGTNGATTNGATTGTACNNAGATATGCTTATGCAAACACGAATTAATTGCATAGNAATTGGACAACCANGGAAGNTCGGTAAATCACGGGGAAATTTTACNTTCCACATGCTCAAGANACNGGGANAACACAGGAACAAGAAAAAAAACCNAGNTNGGANAACNACAGGGGAACACGAAAAGAACANAAAAAGAGCAGAACGGGGAACTTGCCAGTTNAAGACAAACTACAGCAATGGNNAGGAGACAGAGGGGTAAACACACACAACANCNTGGGACATAAAATNACCCGCGAATAACTCCCGGCCTAACACAATNNAGNCCACAAAAACCCAGCACACAAAAATCCNGAACAACCTACTNGCGATCAACAAAAANCACATCACCCNCGGGCCANCTCAAAAGACTACCGTAAACAAAACCAACACACCAANNAACGCACAACNAAACNGCANGNAAAACAAAGCAGTGCTNACGAGCGACAATNNCCNGCCCACCACNACAACNTCNTGAGNACCAATCNCAACGGCCCNACCCCCCNAGNGCGTGNCACAAACATTGANANATCCTAATACCTAGCNCAACACCANCGCAGACCCAANAATACACANGACNAATAACAANAACGCCAAATACATGGACCCCACCACCACACCNCCATGGATCACCCANTATGGCAAAAACCCACACCTGNAGCAAACAAANATNACACAANAGGCCAATGATAGCGAACCGACAAGCGACACCCNNCAACCNNCAANACAAAGCAAACNGAACAGCAGAAAAANCGACTAATANAAACNAAAACNTAGCCCCAAATCCAGCATAACATGACACCACAGCAAACCCGAACGGGNNAACATCACCTC]




>consensus_3466#0
CGATGCAAGAATTCCCGCAGGTTANGAGTGGTATCCCATATGTATCTTGCATTTAATAAA
TAATCTAGCCTCGGAGAGGGGTTGCGGNGAACCAGCAAGCCAAAACCAGATAGTGATCCC
TAGTCCCCTGCAACGCACATACACCTGCGCCTCCCGCAGAGCGTAAGAGAAAAGCCACAT
CTGCCCTGTGCTCCTACTTCTGNGATCCTACTTCGGGTCCCTGCACGCAAGTGCAGCTTG
GGTTGGTGCTTNAAAGAGGGAGCAGGGTGTTGGTTGTNAACCCCCATATTCCATTATGGT
NGNGAGTTATCATGATCAAAATTGCAGCAGCAGTCAGCAAGCAGCAGCAAAGGTATCTCA
GTAAGGGTGGGTCCCAAGTATATTTGTNATCTACACGTACTGTATCTTACTAGATTAAGT
TGGTATCATACATATTCNTACTGATAANNGATNGACCGGGCCCCCCGGTNGATTNGATTG
TACNNAGATATGCTTATGCAAACACGAATTAATTGCATAGNAATTGGACAACCANGGAAG
NTCGGTAAATCACGGGGAAATTTTACNTTCCACATGCTCAAGANACNGGGANAACACAGG
AACAAGAAAAAAAACCNAGNTNGGANAACNACAGGGGAACACGAAAAGAACANAAAAAGA
GCAGAACGGGGAACTTGCCAGTTNAAGACAAACTACAGCAATGGNNAGGAGACAGAGGGG
TAAACACACACAACANCNTGGGACATAAAATNACCCGCGAATAACTCCCGGCCTAACACA
ATNNAGNCCACAAAAACCCAGCACACAAAAATCCNGAACAACCTACTNGCGATCAACAAA
AANCACATCACCCNCGGGCCANCTCAAAAGACTACCGTAAACAAAACCAACACACCAANN
AACGCACAACNAAACNGCANGNAAAACAAAGCAGTGCTNACGAGCGACAATNNCCNGCCC
ACCACNACAACNTCNTGAGNACCAATCNCAACGGCCCNACCCCCCNAGNGCGTGNCACAA
ACATTGANANATCCTAATACCTAGCNCAACACCANCGCAGACCCAANAATACACANGACN
AATAACAANAACGCCAAATACATGGACCCCACCACCACACCNCCATGGATCACCCANTAT
GGCAAAAACCCACACCTGNAGCAAACAAANATNACACAANAGGCCAATGATAGCGAACCG
ACAAGCGACACCCNNCAACCNNCAANACAAAGCAAACNGAACAGCAGAAAAANCGACTAA
TANAAACNAAAACNTAGCCCCAAATCCAGCATAACATGACACCACAGCAAACCCGAACGG
GNNAACATCACCTC

consensusID : consensus_3466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 341
fasta sequence

                              [TCTCCGAGGCTAGATTATTTATTTAATGCAAGGATACATCTGGGATACCCTCCTCCTACCCTTATCGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACGACGACGGTATTTACCCGGGCCTATTTGACAACTACTTAAGCAAGCATTTTAAATATGCTTGTACATGCCCTGATTGGCAGCTTCTTTCACGTGTGTGTTATAAAATCAAACTGCATCTTCATACATGGTGCTCTACGCATCTTTTGACTGTTTTGAGATTCGTGTGATGATTATTGATTGGTCTGCGTGTTTACATTCCCTCATAAACAAAAAAAA]

[+] EMBL AGA283149            [TCTCCGAGGCTAGATTATTTATTTAATGCAAGGATACATCTGGGATACCCTCCTCCTACCCTTATCGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACGACG                                                                                                                                                                                                                     ]
[-] EMBL AGA281557            [      AGGCTAGATTATTTATTTAATGCAA GATACATCTGGGATACCCTCCTCCTACCCTTATCGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACGACGACGGTATTTACCCGGGCCTATTTGACAACTACTTAAGCAAGCATTTTAAATATGCTTGTACATGCCCTGATTGGCAGCTTCTTTCACGTGTGTGTTATAAAATCAAACTGCATCTTCATACATGGTGCTCTACGCATCTTTTGACTGTTTTGAGATTCGTGTGATGATTATTGATTGGTCTGCGTGTTTACATTCCCTCATAAACAAAAAAAA]




>consensus_3466#1
TCTCCGAGGCTAGATTATTTATTTAATGCAAGGATACATCTGGGATACCCTCCTCCTACC
CTTATCGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCA
CAACGACGACGGTATTTACCCGGGCCTATTTGACAACTACTTAAGCAAGCATTTTAAATA
TGCTTGTACATGCCCTGATTGGCAGCTTCTTTCACGTGTGTGTTATAAAATCAAACTGCA
TCTTCATACATGGTGCTCTACGCATCTTTTGACTGTTTTGAGATTCGTGTGATGATTATT
GATTGGTCTGCGTGTTTACATTCCCTCATAAACAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3466#0      CGATGCAAGAATTCCCGCAGGTTANGAGTGGTATCCCATATGTATCTTGCATTTAATAAA 60
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      TAATCTAGCCTCGGAGAGGGGTTGCGGNGAACCAGCAAGCCAAAACCAGATAGTGATCCC 120
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      TAGTCCCCTGCAACGCACATACACCTGCGCCTCCCGCAGAGCGTAAGAGAAAAGCCACAT 180
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      CTGCCCTGTGCTCCTACTTCTGNGATCCTACTTCGGGTCCCTGCACGCAAGTGCAGCTTG 240
consensus_3466#1      ------------------------------------------------TCTCCGAGGCTA 12
                                                                            **  * 

consensus_3466#0      GGTTGGTGCTTNAAAGAGGGAGCAGGGTGTTGGTTGTNAACCCCCATATTCCATTATGGT 300
consensus_3466#1      GATTATTTATTTAATGCAAGGATACA-------TCTGGGATACCCTCCTCCTACCCTTAT 65
                      * **  *  ** ** *   *   *         *     *  ***   * * *   *  *

consensus_3466#0      NGNGAGTTATCATGATCAAAATTGCAGCAGCAGTCAGCAAGCAGCAGCAAAGGTATCTCA 360
consensus_3466#1      CGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACG 125
                       *   * *** ** * *        ** *  **  **  ***    ** *  * *   * 

consensus_3466#0      GTAAGGGTGGGT-CCCAAGTATATTTGTNATCTACACGTACTGTATCTTACTAGATTAAG 419
consensus_3466#1      ACGACGGTATTTACCCGGGCCTATTTGACAACTACT-------TAAGCAAGCATTTTAAA 178
                         * ***   * ***  *  ******  * ****        **    *  *  **** 

consensus_3466#0      TTGGTATCATACATATTCNTACTGATAANNGATNGACCGGGCCCCCCGGTNGATTNGATT 479
consensus_3466#1      TATGC-TTGTACATGCCCTGATTGGCAGCTTCTTTCACGTGTGTGTTATAAAATCAAACT 237
                      *  *  *  *****   *  * **  *     *    ** *           **   * *

consensus_3466#0      GTACNN--AGATATGCTTATGCAAACACGAATTAATTGCATAGNAATTGGACAACCANGG 537
consensus_3466#1      GCATCTTCATACATGGTGCTCTACGCATCTTTTGACTGTTTTGAGATTCGT------GTG 291
                      * *     * * *** *  *  *  **    ** * **  * *  *** *         *

consensus_3466#0      AAGNTCGGTAAATCACGGGGAAATTTTACNTTCCACATGCTCAAGANACNGGGANAACAC 597
consensus_3466#1      ATGATTATTGATTGGTCTGCGTGTTTACATTCCCTCATAAACAAAAAAAA---------- 341
                      * * *   * * *     *    ***    * ** ***   *** * *            

consensus_3466#0      AGGAACAAGAAAAAAAACCNAGNTNGGANAACNACAGGGGAACACGAAAAGAACANAAAA 657
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      AGAGCAGAACGGGGAACTTGCCAGTTNAAGACAAACTACAGCAATGGNNAGGAGACAGAG 717
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      GGGTAAACACACACAACANCNTGGGACATAAAATNACCCGCGAATAACTCCCGGCCTAAC 777
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      ACAATNNAGNCCACAAAAACCCAGCACACAAAAATCCNGAACAACCTACTNGCGATCAAC 837
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      AAAAANCACATCACCCNCGGGCCANCTCAAAAGACTACCGTAAACAAAACCAACACACCA 897
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      ANNAACGCACAACNAAACNGCANGNAAAACAAAGCAGTGCTNACGAGCGACAATNNCCNG 957
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      CCCACCACNACAACNTCNTGAGNACCAATCNCAACGGCCCNACCCCCCNAGNGCGTGNCA 1017
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      CAAACATTGANANATCCTAATACCTAGCNCAACACCANCGCAGACCCAANAATACACANG 1077
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      ACNAATAACAANAACGCCAAATACATGGACCCCACCACCACACCNCCATGGATCACCCAN 1137
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      TATGGCAAAAACCCACACCTGNAGCAAACAAANATNACACAANAGGCCAATGATAGCGAA 1197
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      CCGACAAGCGACACCCNNCAACCNNCAANACAAAGCAAACNGAACAGCAGAAAAANCGAC 1257
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      TAATANAAACNAAAACNTAGCCCCAAATCCAGCATAACATGACACCACAGCAAACCCGAA 1317
consensus_3466#1      ------------------------------------------------------------
                                                                                  

consensus_3466#0      CGGGNNAACATCACCTC 1334
consensus_3466#1      -----------------