cluster # 3481

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Anopheles gambiae
cluster # 3481 cluster # 3481 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3481#0 length = 748 sequences # 2

consensus_3481#1 length = 116 sequences # 1

consensusID : consensus_3481#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 748
fasta sequence

                              [CCGCGGACGCGTGGGCAAAGCTGAAAACTTTACTGCACACATTTTTTTTACGATTTTGCCGGTGTTAAAACGGCGTAGCGATTGTACTTTCCGCCGTTTTACGTAAATTACGCGGCCGAACCGTGTAAAGGACACAAGTAAAGCGCTGGTTTTGGCGTGGCGCCCAGGAAACTTCTAGACAGCGAGTGTTGCACACGTACTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATTAAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTCCTGAAAATCAAATGCACCAACTGTGGCGAAGTGTCGGACAAGTGGCACGATCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTACACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAACCGATCGAGTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACATTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAATTCCGTTGGTGTGTACGAGTTTGAGTCCGATTTTATCAAGATGAAAAAGTGAATATTTGTTTGTTGAGAGGCAATAAGAAACCGTTGGATAA]

[+] EMBL BM625586             [CCGCGGACGCGTGGGCAAAGCTGAAAACTTTACTGCACACATTTTTTTTACGATTTTGCCGGTGTTAAAACGGCGTAGCGATTGTACTTTCCGCCGTTTTACGTAAATTACGCGGCCGAACCGTGTAAAGGACACAAGTAAAGCGCTGGTTTTGGCGTGGCGCCCAGGAAACTTCTAGACAGCGAGTGTTGCACACGTACTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATTAAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTCCTGAAAATCAAATGCACCAACTGTGGCGAAGTGTCGGACAAGTGGCACGATCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTACACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAACCGATCGAGTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACATTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAATTCCGTTGGTGTGTACG                                                                           ]
[+] EMBL BX612015             [                                                                                                                                                                    CAGGAAACTTCTAGACAGCGAGTGTTGCACACGTATTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATTAAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTCCTGAAAATCAAATGCACCAACTGTGGCGAAGTGTCGGACAAGTGGCACGATCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTACACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAACCGATCGATTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACATTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAATTCCGTTGGTGTGTACGAGTTTGAGTCCGATTTTATCAAGATGAAAAAGTGAATATTTGTTTGTTGAGAGGCAATAAGAAACCGTTGGATAA]




>consensus_3481#0
CCGCGGACGCGTGGGCAAAGCTGAAAACTTTACTGCACACATTTTTTTTACGATTTTGCC
GGTGTTAAAACGGCGTAGCGATTGTACTTTCCGCCGTTTTACGTAAATTACGCGGCCGAA
CCGTGTAAAGGACACAAGTAAAGCGCTGGTTTTGGCGTGGCGCCCAGGAAACTTCTAGAC
AGCGAGTGTTGCACACGTACTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATT
AAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTC
CTGAAAATCAAATGCACCAACTGTGGCGAAGTGTCGGACAAGTGGCACGATCTGACCGAA
GGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGC
CGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTACACG
GAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAACCG
ATCGAGTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACATTC
GAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAATTCC
GTTGGTGTGTACGAGTTTGAGTCCGATTTTATCAAGATGAAAAAGTGAATATTTGTTTGT
TGAGAGGCAATAAGAAACCGTTGGATAA

consensusID : consensus_3481#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [CATCGGTACTAATACAATAAACTAATCCTGGACAAGTGGCACGATTCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCC]

[+] EMBL AGA281877            [CATCGGTACTAATACAATAAACTAATCCTGGACAAGTGGCACGATTCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCC]




>consensus_3481#1
CATCGGTACTAATACAATAAACTAATCCTGGACAAGTGGCACGATTCTGACCGAAGGCGA
GCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3481#0      CCGCGGACGCGTGGGCAAAGCTGAAAACTTTACTGCACACATTTTTTTTACGATTTTGCC 60
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      GGTGTTAAAACGGCGTAGCGATTGTACTTTCCGCCGTTTTACGTAAATTACGCGGCCGAA 120
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      CCGTGTAAAGGACACAAGTAAAGCGCTGGTTTTGGCGTGGCGCCCAGGAAACTTCTAGAC 180
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      AGCGAGTGTTGCACACGTACTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATT 240
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      AAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTC 300
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      CTGAAAATCAAATGCACCAA--CTGTGGCGAAGTGTCGGACAAGTGGCACGAT-CTGACC 357
consensus_3481#1      --------CATCGGTACTAATACAATAAACTAATCCTGGACAAGTGGCACGATTCTGACC 52
                              **   * ** **  *  *     * *   **************** ******

consensus_3481#0      GAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAG 417
consensus_3481#1      GAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAG 112
                      ************************************************************

consensus_3481#0      TGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTAC 477
consensus_3481#1      TGCC-------------------------------------------------------- 116
                      ****                                                        

consensus_3481#0      ACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAA 537
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      CCGATCGAGTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACA 597
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      TTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAAT 657
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      TCCGTTGGTGTGTACGAGTTTGAGTCCGATTTTATCAAGATGAAAAAGTGAATATTTGTT 717
consensus_3481#1      ------------------------------------------------------------
                                                                                  

consensus_3481#0      TGTTGAGAGGCAATAAGAAACCGTTGGATAA 748
consensus_3481#1      -------------------------------